Package: effectR
Title: Predicts Oomycete Effectors
Version: 1.0.2
Authors@R: c(person("Javier", "Tabima", email = "tabimaj@oregonstate.edu", role = c("aut", "cre")),person(c("Niklaus", "J."), "Grunwald", role = "ths", email =
              "grunwaln@science.oregonstate.edu"))
Description: Predicts cytoplasmic effector proteins using genomic data by searching for motifs of interest using regular expression searches and hidden Markov models (HMM) based in Haas et al. (2009) <doi:10.1038/nature08358>. 
Depends: R (>= 3.5.0)
Imports: seqinr (>= 3.3.6), ggplot2 (>= 2.2.1), shiny, reshape2, utils,
        rmarkdown, viridis
License: GPL-2 | GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.0
Suggests: knitr, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-09-30 20:56:05 UTC; tabimaj
Author: Javier Tabima [aut, cre],
  Niklaus J. Grunwald [ths]
Maintainer: Javier Tabima <tabimaj@oregonstate.edu>
Repository: CRAN
Date/Publication: 2018-09-30 21:30:03 UTC
Built: R 4.1.3; ; 2023-04-17 18:30:33 UTC; windows
