# Generated by roxygen2: do not edit by hand

export("bulk.simul<-")
export("cell.names<-")
export("cell.types<-")
export("deconv.data<-")
export("deconv.results<-")
export("features<-")
export("method<-")
export("model<-")
export("plots<-")
export("prob.cell.types<-")
export("prob.matrix<-")
export("project<-")
export("set.list<-")
export("set<-")
export("single.cell.real<-")
export("single.cell.simul<-")
export("test.deconv.metrics<-")
export("test.metrics<-")
export("test.pred<-")
export("trained.model<-")
export("training.history<-")
export("zinb.params<-")
export("zinbwave.model<-")
export(DigitalDLSorter)
export(DigitalDLSorterDNN)
export(ProbMatrixCellTypes)
export(ZinbParametersModel)
export(barErrorPlot)
export(barPlotCellTypes)
export(blandAltmanLehPlot)
export(bulk.simul)
export(calculateEvalMetrics)
export(cell.names)
export(cell.types)
export(corrExpPredPlot)
export(deconv.data)
export(deconv.results)
export(deconvDigitalDLSorter)
export(deconvDigitalDLSorterObj)
export(distErrorPlot)
export(estimateZinbwaveParams)
export(features)
export(generateBulkCellMatrix)
export(getProbMatrix)
export(installTFpython)
export(listToDDLS)
export(listToDDLSDNN)
export(loadDeconvData)
export(loadSCProfiles)
export(loadTrainedModelFromH5)
export(method)
export(model)
export(plotTrainingHistory)
export(plots)
export(preparingToSave)
export(prob.cell.types)
export(prob.matrix)
export(project)
export(saveRDS)
export(saveTrainedModelAsH5)
export(set)
export(set.list)
export(showProbPlot)
export(simBulkProfiles)
export(simSCProfiles)
export(single.cell.real)
export(single.cell.simul)
export(test.deconv.metrics)
export(test.metrics)
export(test.pred)
export(trainDigitalDLSorterModel)
export(trained.model)
export(training.history)
export(zinb.params)
export(zinbwave.model)
exportClasses(DigitalDLSorter)
exportMethods(barPlotCellTypes)
exportMethods(loadDeconvData)
exportMethods(saveRDS)
import(SingleCellExperiment)
import(SummarizedExperiment)
import(methods)
importClassesFrom(Matrix,dgCMatrix)
importFrom(RColorBrewer,brewer.pal)
importFrom(dplyr,"%>%")
importFrom(dplyr,as_tibble)
importFrom(dplyr,filter)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,stat_density_2d)
importFrom(ggplot2,stat_smooth)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggpubr,stat_cor)
importFrom(keras,compile)
importFrom(keras,evaluate_generator)
importFrom(keras,fit_generator)
importFrom(keras,get_output_shape_at)
importFrom(keras,get_weights)
importFrom(keras,keras_model_sequential)
importFrom(keras,layer_activation)
importFrom(keras,layer_batch_normalization)
importFrom(keras,layer_dense)
importFrom(keras,layer_dropout)
importFrom(keras,load_model_hdf5)
importFrom(keras,model_from_json)
importFrom(keras,model_to_json)
importFrom(keras,optimizer_adam)
importFrom(keras,predict_generator)
importFrom(keras,save_model_hdf5)
importFrom(keras,set_weights)
importFrom(methods,setClass)
importFrom(methods,setClassUnion)
importFrom(methods,setOldClass)
importFrom(reticulate,conda_binary)
importFrom(reticulate,conda_install)
importFrom(reticulate,py_available)
importFrom(reticulate,py_module_available)
importFrom(rlang,.data)
importFrom(stats,aggregate)
importFrom(stats,as.formula)
importFrom(stats,model.matrix)
importFrom(stats,rbinom)
importFrom(stats,rnbinom)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(tensorflow,install_tensorflow)
importFrom(tidyr,gather)
importFrom(tools,file_path_sans_ext)
importFrom(utils,compareVersion)
importFrom(utils,packageVersion)
importFrom(utils,read.delim)
