aa_coi_PHMM             Amino acid profile hidden Markov model for
                        coi5p.
censored_translation    Censored Translation of a DNA string.
coi5p                   Build a coi5p object from a DNA sequence
                        string.
coi5p_pipe              Run the entire coi5p pipeline for an input
                        sequence.
coil                    'coil': evaluation of COI-5P barcode data
example_barcode_data    Example barcode data.
example_nt_string       Example coi5p DNA sequence string
flatten_coi5p           Flatten a list of coi5p output objects into a
                        dataframe.
frame                   Take a coi5p sequence and place it in reading
                        frame.
indel_check             Check if a coi5p sequence likely contains an
                        error.
nt_coi_PHMM             Nucleotide profile hidden Markov model for
                        coi5p.
subsetPHMM              Subset an existing PHMM.
trans_df                Data frame containing the translation table
                        recommendation.
translate               Translate a coi5p sequence.
which_trans_table       Determine the translation table to use for a
                        given taxonomic group.
