044d39105d81890b3867281fa191640e *CITATION
992151af46c4f334a90f96090fd21d9e *DESCRIPTION
2be43d5dad2b4d4bfeb046c943de888e *INDEX
1ac6247f84c1d66c51bedd11f0fe8c9f *Meta/Rd.rds
104d433669a37420724bd986c19a450b *Meta/features.rds
762255dd853e7b614cf38a98fc403bb2 *Meta/hsearch.rds
37e797ebdbc2e2c5352616b5cd091fe2 *Meta/links.rds
9187d759fba6b7193d70655de9d759f3 *Meta/nsInfo.rds
5d8b942c9fa88287ce39c3f9718801a2 *Meta/package.rds
a0542c2bb6cbd2b120d412589b7a3b6c *NAMESPACE
121bdd18a664b427829430e82a3dcf04 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/aroma.cn
08069d6ca1a3d087fa13b1e3f6f57441 *R/aroma.cn.rdb
c597655dcfcb741e52459968b6ea64bb *R/aroma.cn.rdx
42ebecde7fbd301fdb5ff5ebc4aa18e9 *help/AnIndex
1c9a78f83fa2d87ba457c5544d04c5ea *help/aliases.rds
af6579e0c466c5213afa6d3b8d4ed265 *help/aroma.cn.rdb
390adf2179f00f98a71645124bbb62df *help/aroma.cn.rdx
1dcc58d3bfac5ea39b7a0097e257ac32 *help/paths.rds
b1672f10ce1b244e8305c14239980610 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c1c1b071c902ad6ab220f79a3178888c *templates/rsp/PairedPSCBS,deShear,report.tex.rsp
f01bbc88ade170e0dcb4c76fac17fe7d *templates/rsp/bioinformatics-journals-abbr.bib
f3907cf5bef1f44c8c15558e94274a18 *templates/rsp/natbib.bst
f690ef923e880968c45b6debb29ea434 *testScripts/devel/C1C2/21.PairedPSCBS,deShear,report.R
b18b3a27fff4fdd80b6ed813d191e735 *testScripts/devel/C1C2/31.PairedPSCBS,DP,deShear.R
de98567b2f6aec673aa1bb361eabfa26 *testScripts/setup/01a.downloadAllAnnotationData.R
89621fa2e9340994b51eebb2c0845bd9 *testScripts/setup/01b.downloadAllRawDataSet.R
c9d6599df89939890d79d4e0fc3a79ad *testScripts/setup/01c.installAllPackages.R
64357076edc0e16a42ca5156a8f30b44 *testScripts/setup/99a.cleanupRootDirectories.R
587b454a0475abb90c181ac01cad519b *testScripts/setup/spawnTests.sh
8062b36bdc644134bce65f6cfe74c166 *testScripts/system/CondSegmentation/test20090927,TBN,plot.Rex
1784cbfcf2d30acedbbe9e5b6b9110ec *testScripts/system/CondSegmentation/test20091014,TBN,plot.Rex
0000433b32557bbe0df5931f2dc327cf *testScripts/system/CopyNumberProfiles/20100909a,findAtomicAberrations.Rex
5ceca790b1c5d64857ce036aa641d2c4 *testScripts/system/CopyNumberProfiles/20100909b,NormalContamination.Rex
88c13f733dceabfd4034f68f1affb80d *testScripts/system/CopyNumberProfiles/20100911a,TumorClonality.Rex
21292aa1b85768708c514ebdd0662893 *testScripts/system/CopyNumberProfiles/20100911b,TumorClonality,lineage.Rex
d6f631124870e5ca7329222929346c4d *testScripts/system/CopyNumberProfiles/20100912a,SegmentationStdError.Rex
bed3fb7ffcd1e9ecbcc8394549372310 *testScripts/system/CopyNumberProfiles/20100912b,Saturation.Rex
ca955d2b1405e8849bebb081e67c3caa *testScripts/system/CurveNormalization,OV/test20090715a,waves.Rex
cc84822d533c0c00e5160fe3fcf26b32 *testScripts/system/MSLHN/20091218,TCGA,MSLHCN.Rex
753590f4e944f639b8a9e2109e301175 *testScripts/system/MultiPlatform/test20090208,TCGA,MSCN.Rex
8ee56c3fe6813dce91880ae6afdc47ab *testScripts/system/MultiPlatform/test20090209,TCGA,plot.Rex
8ad8697bfbbcaa9da7bd18b98c923a22 *testScripts/system/MultiPlatform/test20090210,TCGA,MSCN,plot.Rex
3f13b99b3603bdff2614b546365bfa38 *testScripts/system/MultiPlatform/test20090512,TCGA,MSCN,shifts.Rex
d7c8fa6b9cec6c48b5ab8e04eadb75d7 *testScripts/system/MultiPlatform/test20090512,TCGA,MSCN,wCBS.Rex
3df219c76e242e7ad13b5ec5385f4521 *testScripts/system/MultiPlatform/test20090512,TCGA,MSCN,weights.Rex
4e67f71ce6bf8a4c5378e9856a28d4d1 *testScripts/system/MultiPlatform/test20090720,TCGA,MSCN,tracks.Rex
811f60619feb726e279db5eabc06d969 *testScripts/system/MultiPlatform/test20100102,TCGA,MSCN,mpCBS.Rex
dc97b1b3e69e8fd33f7979a94ac31499 *testScripts/system/TumorBoost/test20090429a,NGC.Rex
a67f70ddefe502be88ed003d3913adf8 *testScripts/system/TumorBoost/test20090429b,TBN.Rex
32f4129918232454cafe62afd554dddb *testScripts/system/TumorBoost/test20090429c,TBN,plot.Rex
5060810e7f02288f5bbb43912b45a476 *testScripts/system/TumorBoost/test20090429d,TBN,LOH,plot.Rex
272932638c67aa701782934ee4add363 *testScripts/system/TumorBoost/test20090620a,NGC.Rex
dd4cc569e94c9529b92b51a99ef77cfd *testScripts/system/chipTypes/GenomeWideSNP_6/calibrateC1C2,20111026.Rex
290156b8f02f00de6cc2dd651cd9c194 *testScripts/system/chipTypes/GenomeWideSNP_6/calibrateC1C2.PairedPSCBS.Rex
77fd1f08fa7968d5b3d9f379ea364b64 *testScripts/system/chipTypes/GenomeWideSNP_6/deShearC1C2.PairedPSCBS.Rex
a493230cf30b4c955fc69d1a58fba954 *testScripts/system/chipTypes/GenomeWideSNP_6/normalizeLoess2D.PairedPSCBS.Rex
674117c714550115376c102c2f5f8743 *testScripts/system/chipTypes/GenomeWideSNP_6/orthogonalizeC1C2.PairedPSCBS.Rex
63b25bfcba3550e2df64a0ef3528449e *testScripts/system/pairedPSCN/R/00.setup.R
c11627802fe64d57a0d320b2fd322529 *testScripts/system/pairedPSCN/R/getTumorNormalPairs.R
9f461f221316e63b592c82119a4dad0d *testScripts/system/pairedPSCN/R/loadAllDataSets.R
8886c91c0fd41c00562723fd5a41a345 *testScripts/system/pairedPSCN/R/zzz.R
07a16a200cb5e7af3d5ffbc2b9b1ec92 *testScripts/system/pairedPSCN/genomicPlots.tex.rsp
4568b3a5ef69546d139ad61fd7873b6b *testScripts/system/segmentation/20091110,CBS.Rex
4837bfe401cf690d9429a35a49dc789f *testScripts/system/tracks/20091008,HCC1143,CRMAv2-dChip-GTC,plot.Rex
2ab2f3dfc2cdfc447ed126a5402c62f0 *testScripts/system/tracks/20091010,TCGA,plot.Rex
5bdb756f59634b5954e24d663360a32f *testScripts/system/tracks/utils.R
