Close_SSD               Close SNP set data file (SSD)
Generate_SSD_SetID      Generate SNP set data file (SSD)
Get_EffectiveNumberTest
                        Estimate the effective number of tests for
                        Bonferroni correction
Get_Genotypes_SSD       Get Genotype data from SSD file
Get_Logistic_Weights    Get the logistic weight
Get_RequiredSampleSize
                        Get the required sample size to achieve the
                        given power
Get_Resampling_Pvalue   Compute a resampling p-value
Open_SSD                Open SNP set data file (SSD)
Power_Continuous        Power calculation, continuous traits
Power_Logistic          Power calculation, Dichotomous traits
QQPlot_Adj              Adjusted QQ plot
Read_Plink_FAM          Read Plink FAM and covariates files
Read_SNP_WeightFile     Read a file with custom weights
Resampling_FWER         Obtain significant SNP sets after controlling
                        family wise error rate (FWER)
SKAT                    SNP-set (Sequence) Kernel Association Test
SKAT.SSD.All            SNP-set Kernel Association Test
SKAT.example            Example data for SKAT
SKAT.example.ChrX       Example data for SKAT
SKAT.fam.example        Example data for SKAT_NULL_emmaX
SKAT.haplotypes         Haplotype dataset for power calculation
SKATBinary              SNP set test for binary traits with asymptotic
                        and efficient resampling methods
SKATBinary.example      Example data for SKAT
SKATBinary_Robust       SNP set test for binary traits with robust
                        region-based methods
SKATBinary_Single       Single variant tests for binary traits with
                        Firth and efficient resampling methods
SKAT_ChrX               SNP-set (Sequence) Kernel Association Test for
                        X and Y chromosome variables
SKAT_CommonRare         SKAT for the combined effect of common and rare
                        variants
SKAT_CommonRare_Robust
                        SNP set test (both common and rare variants)
                        for binary traits with robust region-based
                        methods
SKAT_NULL_emmaX         Get parameters and residuals from the null
                        model with incorporating the kinship structure
SKAT_Null_Model         Get parameters and residuals from the NULL
                        model
SKAT_Null_Model_MomentAdjust
                        Get parameters and residuals from the NULL
                        model for small sample adjustment
SSD_FILE_OPEN.isOpen    Internal variables for SSD and functions for
                        other packages
