.callOpenTiles_ArchR	callOpenTiles-methods
.counts_plot_default_theme	dot-counts_plot_default_theme
.gene_plot_theme	dot-gene_plot_theme
addAccessibilityShift	addAccessibilityShift
addMotifSet	addMotifSet
annotateTiles	annotateTiles
callOpenTiles	callOpenTiles-methods
callOpenTiles,ArchRProject-method	callOpenTiles-methods
callOpenTiles,GRangesList-method	callOpenTiles-methods
callOpenTiles,list-method	callOpenTiles-methods
differentialsToGRanges	differentialsToGRanges
exampleBlackList	exampleBlackList
exampleCellColData	exampleCellColData
exampleFragments	exampleFragments
extractRegion	extractRegion
filterCoAccessibleLinks	filterCoAccessibleLinks
finalModelObject	finalModelObject
getCellPopMatrix	getCellPopMatrix
getCoAccessibleLinks	getCoAccessibleLinks
getDifferentialAccessibleTiles	getDifferentialAccessibleTiles
getPopFrags	getPopFrags
getSampleTileMatrix	getSampleTileMatrix
GRangesToString	GRangesToString
plotConsensus	plotConsensus
plotRegion	plotRegion
singlePopulationConsensusTiles	singlePopulationConsensusTiles
singlePopulationSampleTileMatrix	singlePopulationSampleTileMatrix
StringsToGRanges	StringsToGRanges
subsetMOCHAObject	subsetMOCHAObject
youden_threshold	youden_threshold
