.counts_plot_default_theme
                        Default ggplot theme for counts plot
.gene_plot_theme        Common theme for gene plots
GRangesToString         'GRangesToString' Converts a GRanges object to
                        a string in the format 'chr1:100-200'
StringsToGRanges        'StringsToGRanges'
addAccessibilityShift   'addAccessibilityShift'
addMotifSet             'addMotifSet'
annotateTiles           'annotateTiles'
callOpenTiles           'callOpenTiles' Perform peak-calling on a set
                        of fragments or an ArchR Project.
differentialsToGRanges
                        'differentialsToGRanges' Converts a data.frame
                        matrix to a GRanges, preserving additional
                        columns as GRanges metadata
exampleBlackList        exampleBlackList
exampleCellColData      exampleCellColData
exampleFragments        exampleFragments
extractRegion           'extractRegion'
filterCoAccessibleLinks
                        'filterCoAccessibleLinks'
finalModelObject        finalModelObject
getCellPopMatrix        'getCellPopMatrix'
getCoAccessibleLinks    'getCoAccessibleLinks'
getDifferentialAccessibleTiles
                        'getDifferentialAccessibleTiles'
getPopFrags             Extract fragments by populations from an ArchR
                        Project
getSampleTileMatrix     'getSampleTileMatrix'
plotConsensus           'plotConsensus'
plotRegion              'plotRegion'
subsetMOCHAObject       'subsetObject'
youden_threshold        youden_threshold
