A                       TF-gene regulation strength matrix
A_old                   TF-gene regulation strength matrix sampled from
                        the previous round
A_sampling              Regulation Strength Sampling Function
BICORN                  BICORN Algorithm Function
Binding_TFs             TFs in the prior binding network
Binding_genes           Genes in the prior binding network
Binding_matrix          Prior TF-gene binding network
C                       TF-gene binding network
C_old                   TF-gene binding network sampled from the
                        previous round
C_prior                 Prior TF-gene binding network
C_sampling_cluster      cis-Regulatory Module Sampling Function
Exp_data                Gene expression data
Exp_genes               Genes in the expression data
X                       Transcription factr activity matrix
X_old                   Transcription factr activity matrix sampled
                        from the previous round
X_sampling              Transcription Factor Activity Sampling Function
Y                       Gene expression data used for module inference
alpha                   Inverse-gamma distribution hyper-parameter
                        alpha
base_line               Gene baseline expression
base_line_old           Gene baseline expression sampled from the
                        previous round.
baseline_sampling       Gene Baseline Expression Sampling Function
beta                    Inverse-gamma distribution hyper-parameter beta
data_integration        Data Initialization for BICORN
sigma_A                 Regulation strength variance
sigma_X                 Transcription factor activity variance
sigma_baseline          Variance of baseline gene expression.
sigma_noise             Variance of gene expression fitting residuals.
sigmanoise_sampling     Fitting Residule Variance Sampling Function
