Class BinaryFillholeImageFilter

java.lang.Object

org.itk.simple.ProcessObject

org.itk.simple.ImageFilter

org.itk.simple.BinaryFillholeImageFilter

public class BinaryFillholeImageFilter
extends ImageFilter

Remove holes not connected to the boundary of the image. BinaryFillholeImageFilter fills holes in a binary image. Geodesic morphology and the Fillhole algorithm is described in Chapter 6 of Pierre Soille's book "Morphological Image Analysis: Principles and Applications", Second Edition, Springer, 2003. Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France. This implementation was taken from the Insight Journal paper: https://doi.org/10.54294/q6auw4 See: GrayscaleFillholeImageFilter itk::simple::BinaryFillhole for the procedural interface itk::BinaryFillholeImageFilter for the Doxygen on the original ITK class. C++ includes: sitkBinaryFillholeImageFilter.h

Field Summary

Fields inherited from class ProcessObject

swigCMemOwn

Modifier and Type	Field	Description
protected boolean	swigCMemOwn

Constructor Summary

Constructors

Modifier	Constructor	Description
	BinaryFillholeImageFilter()	itk::simple::BinaryFillholeImageFilter::BinaryFillholeImageFilter() Default Constructor that takes no arguments and initializes default parameters
protected	BinaryFillholeImageFilter(long cPtr, boolean cMemoryOwn)

Method Summary

Modifier and Type	Method	Description
void	delete()	virtual itk::simple::BinaryFillholeImageFilter::~BinaryFillholeImageFilter() Destructor
Image	execute(Image image1)	Image itk::simple::BinaryFillholeImageFilter::Execute(const Image &image1) Execute the filter on the input image
protected void	finalize()
void	fullyConnectedOff()	Self& itk::simple::BinaryFillholeImageFilter::FullyConnectedOff()
void	fullyConnectedOn()	Self& itk::simple::BinaryFillholeImageFilter::FullyConnectedOn() Set the value of FullyConnected to true or false respectfully.
protected static long	getCPtr(BinaryFillholeImageFilter obj)
double	getForegroundValue()	double itk::simple::BinaryFillholeImageFilter::GetForegroundValue() const Get the value in the image considered as "foreground".
boolean	getFullyConnected()	bool itk::simple::BinaryFillholeImageFilter::GetFullyConnected() const Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity.
String	getName()	std::string itk::simple::BinaryFillholeImageFilter::GetName() const Name of this class
void	setForegroundValue(double ForegroundValue)	Self& itk::simple::BinaryFillholeImageFilter::SetForegroundValue(double ForegroundValue) Set the value in the image to consider as "foreground".
void	setFullyConnected(boolean FullyConnected)	Self& itk::simple::BinaryFillholeImageFilter::SetFullyConnected(bool FullyConnected) Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity.
protected static long	swigRelease(BinaryFillholeImageFilter obj)
String	toString()	std::string itk::simple::BinaryFillholeImageFilter::ToString() const Print ourselves out

Methods inherited from class ImageFilter

getCPtr, swigRelease

Modifier and Type	Method	Description
protected static long	getCPtr(ImageFilter obj)
protected static long	swigRelease(ImageFilter obj)

Methods inherited from class ProcessObject

abort, addCommand, debugOff, debugOn, getCPtr, getDebug, getGlobalDefaultCoordinateTolerance, getGlobalDefaultDebug, getGlobalDefaultDirectionTolerance, getGlobalDefaultNumberOfThreads, getGlobalDefaultThreader, getGlobalWarningDisplay, getNumberOfThreads, getNumberOfWorkUnits, getProgress, globalDefaultDebugOff, globalDefaultDebugOn, globalWarningDisplayOff, globalWarningDisplayOn, hasCommand, removeAllCommands, setDebug, setGlobalDefaultCoordinateTolerance, setGlobalDefaultDebug, setGlobalDefaultDirectionTolerance, setGlobalDefaultNumberOfThreads, setGlobalDefaultThreader, setGlobalWarningDisplay, setNumberOfThreads, setNumberOfWorkUnits, swigRelease

Modifier and Type	Method	Description
void	abort()	virtual void itk::simple::ProcessObject::Abort() Sets an abort flag on the active process.
int	addCommand(EventEnum event, Command cmd)	virtual int itk::simple::ProcessObject::AddCommand(itk::simple::EventEnum event, itk::simple::Command &cmd) Add a Command Object to observer the event.
void	debugOff()
void	debugOn()
protected static long	getCPtr(ProcessObject obj)
boolean	getDebug()
static double	getGlobalDefaultCoordinateTolerance()
static boolean	getGlobalDefaultDebug()
static double	getGlobalDefaultDirectionTolerance()
static long	getGlobalDefaultNumberOfThreads()
static String	getGlobalDefaultThreader()
static boolean	getGlobalWarningDisplay()
long	getNumberOfThreads()
long	getNumberOfWorkUnits()
float	getProgress()	virtual float itk::simple::ProcessObject::GetProgress() const An Active Measurement of the progress of execution.
static void	globalDefaultDebugOff()
static void	globalDefaultDebugOn()
static void	globalWarningDisplayOff()
static void	globalWarningDisplayOn()
boolean	hasCommand(EventEnum event)	virtual bool itk::simple::ProcessObject::HasCommand(itk::simple::EventEnum event) const Query of this object has any registered commands for event.
void	removeAllCommands()	virtual void itk::simple::ProcessObject::RemoveAllCommands() Remove all registered commands.
void	setDebug(boolean debugFlag)
static void	setGlobalDefaultCoordinateTolerance(double arg0)
static void	setGlobalDefaultDebug(boolean debugFlag)
static void	setGlobalDefaultDirectionTolerance(double arg0)
static void	setGlobalDefaultNumberOfThreads(long n)
static boolean	setGlobalDefaultThreader(String threader)
static void	setGlobalWarningDisplay(boolean flag)
void	setNumberOfThreads(long n)
void	setNumberOfWorkUnits(long n)
protected static long	swigRelease(ProcessObject obj)

Methods inherited from class Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

BinaryFillholeImageFilter

protected BinaryFillholeImageFilter(long cPtr,
 boolean cMemoryOwn)

BinaryFillholeImageFilter

public BinaryFillholeImageFilter()

itk::simple::BinaryFillholeImageFilter::BinaryFillholeImageFilter() Default Constructor that takes no arguments and initializes default parameters

Method Details

getCPtr

protected static long getCPtr(BinaryFillholeImageFilter obj)

swigRelease

protected static long swigRelease(BinaryFillholeImageFilter obj)

finalize

protected void finalize()

Overrides:

finalize in class ImageFilter

delete

public void delete()

virtual itk::simple::BinaryFillholeImageFilter::~BinaryFillholeImageFilter() Destructor

Overrides:

delete in class ImageFilter

setFullyConnected

public void setFullyConnected(boolean FullyConnected)

Self& itk::simple::BinaryFillholeImageFilter::SetFullyConnected(bool FullyConnected) Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

fullyConnectedOn

public void fullyConnectedOn()

Self& itk::simple::BinaryFillholeImageFilter::FullyConnectedOn() Set the value of FullyConnected to true or false respectfully.

fullyConnectedOff

public void fullyConnectedOff()

Self& itk::simple::BinaryFillholeImageFilter::FullyConnectedOff()

getFullyConnected

public boolean getFullyConnected()

bool itk::simple::BinaryFillholeImageFilter::GetFullyConnected() const Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

setForegroundValue

public void setForegroundValue(double ForegroundValue)

Self& itk::simple::BinaryFillholeImageFilter::SetForegroundValue(double ForegroundValue) Set the value in the image to consider as "foreground". Defaults to maximum value of InputPixelType.

getForegroundValue

public double getForegroundValue()

double itk::simple::BinaryFillholeImageFilter::GetForegroundValue() const Get the value in the image considered as "foreground". Defaults to maximum value of InputPixelType.

getName

public String getName()

std::string itk::simple::BinaryFillholeImageFilter::GetName() const Name of this class

Overrides:

getName in class ProcessObject

toString

public String toString()

std::string itk::simple::BinaryFillholeImageFilter::ToString() const Print ourselves out

Overrides:

toString in class ProcessObject

execute

public Image execute(Image image1)

Image itk::simple::BinaryFillholeImageFilter::Execute(const Image &image1) Execute the filter on the input image