+ exec + rm -rf /rpmbuild + mkdir -p /rpmbuild + su -c 'rpmbuild -ba /builddir/build/SPECS/staden-io_lib.spec --define "debug_package %{nil}" --undefine _annotated_build --define "_missing_doc_files_terminate_build %{nil}" --define "_emacs_sitestartdir /usr/share/emacs/site-lisp/site-start.d" --define "_emacs_sitelispdir /usr/share/emacs/site-lisp" --nocheck ' mockbuild Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.4T6ebc + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf io_lib-1.12.4 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/io_lib-1.12.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd io_lib-1.12.4 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + mv io_lib-config.in staden-io_lib-config.in + sed -i s/libread/libstaden-read/g io_lib/Makefile.in progs/Makefile.in + sed -i s/lread/lstaden-read/ staden-io_lib-config.in + sed -i s/io_lib-config/staden-io_lib-config/g configure Makefile.in + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.xtj0Un + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 ' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 ' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + '[' 1 = 1 ']' + '[' x '!=' x-specs=/usr/lib/rpm/redhat/redhat-hardened-ld ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh + ./configure --build=riscv64-redhat-linux-gnu --host=riscv64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for riscv64-redhat-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking build system type... riscv64-redhat-linux-gnu checking host system type... riscv64-redhat-linux-gnu checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for riscv64-redhat-linux-gnu-g++... no checking for riscv64-redhat-linux-gnu-c++... no checking for riscv64-redhat-linux-gnu-gpp... no checking for riscv64-redhat-linux-gnu-aCC... no checking for riscv64-redhat-linux-gnu-CC... no checking for riscv64-redhat-linux-gnu-cxx... no checking for riscv64-redhat-linux-gnu-cc++... no checking for riscv64-redhat-linux-gnu-cl.exe... no checking for riscv64-redhat-linux-gnu-FCC... no checking for riscv64-redhat-linux-gnu-KCC... no checking for riscv64-redhat-linux-gnu-RCC... no checking for riscv64-redhat-linux-gnu-xlC_r... no checking for riscv64-redhat-linux-gnu-xlC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for riscv64-redhat-linux-gnu-g77... no checking for riscv64-redhat-linux-gnu-xlf... no checking for riscv64-redhat-linux-gnu-f77... no checking for riscv64-redhat-linux-gnu-frt... no checking for riscv64-redhat-linux-gnu-pgf77... no checking for riscv64-redhat-linux-gnu-cf77... no checking for riscv64-redhat-linux-gnu-fort77... no checking for riscv64-redhat-linux-gnu-fl32... no checking for riscv64-redhat-linux-gnu-af77... no checking for riscv64-redhat-linux-gnu-xlf90... no checking for riscv64-redhat-linux-gnu-f90... no checking for riscv64-redhat-linux-gnu-pgf90... no checking for riscv64-redhat-linux-gnu-pghpf... no checking for riscv64-redhat-linux-gnu-epcf90... no checking for riscv64-redhat-linux-gnu-gfortran... no checking for riscv64-redhat-linux-gnu-g95... no checking for riscv64-redhat-linux-gnu-xlf95... no checking for riscv64-redhat-linux-gnu-f95... no checking for riscv64-redhat-linux-gnu-fort... no checking for riscv64-redhat-linux-gnu-ifort... no checking for riscv64-redhat-linux-gnu-ifc... no checking for riscv64-redhat-linux-gnu-efc... no checking for riscv64-redhat-linux-gnu-pgf95... no checking for riscv64-redhat-linux-gnu-lf95... no checking for riscv64-redhat-linux-gnu-ftn... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for riscv64-redhat-linux-gnu-ar... no checking for ar... ar checking for riscv64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for riscv64-redhat-linux-gnu-strip... no checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool host=riscv64-redhat-linux-gnu Fixing libtool for -rpath problems. checking for gawk... (cached) gawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 7.59.0 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gethostbyname... none required checking for library containing socket... none required checking whether byte ordering is bigendian... no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking whether byte ordering is bigendian... (cached) no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking for inline... inline checking for mode_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for library containing cos... -lm checking for strdup... yes configure: creating ./config.status config.status: creating Makefile config.status: creating io_lib/Makefile config.status: creating progs/Makefile config.status: creating tests/Makefile config.status: creating staden-io_lib-config config.status: creating io_lib/os.h config.status: creating io_lib_config.h config.status: executing depfiles commands + sed -i 's+\(search_path_spec="\)+\1/lib64 /usr/lib64 +' libtool + make -j4 make all-recursive make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' Making all in io_lib make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c mkdir .libs gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c scf_extras.c -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c translate.c -fPIC -DPIC -o .libs/libstaden_read_la-translate.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c compression.c -fPIC -DPIC -o .libs/libstaden_read_la-compression.o translate.c: In function 'read2exp': translate.c:292:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (p = strrchr(EN, '/')) ^ translate.c:302:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (cp = strrchr(read->trace_name, '/')) ^~ translate.c: In function 'exp2read': translate.c:650:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (fp = open_trace_file(exp_get_entry(e, EFLT_LN), fn)) { ^~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c ztr.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c ztr_translate.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c ztr.c: In function 'mfread_ztr': ztr.c:335:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (chunk = ztr_read_chunk_hdr(fp)) { ^~~~~ ztr_translate.c:335:14: warning: 'ztr_encode_confidence_1' defined but not used [-Wunused-function] static char *ztr_encode_confidence_1(ztr_t *z, ^~~~~~~~~~~~~~~~~~~~~~~ ztr_translate.c:182:14: warning: 'ztr_encode_samples_T' defined but not used [-Wunused-function] static char *ztr_encode_samples_T(ztr_t *z, ^~~~~~~~~~~~~~~~~~~~ ztr_translate.c:175:14: warning: 'ztr_encode_samples_G' defined but not used [-Wunused-function] static char *ztr_encode_samples_G(ztr_t *z, ^~~~~~~~~~~~~~~~~~~~ ztr_translate.c:168:14: warning: 'ztr_encode_samples_C' defined but not used [-Wunused-function] static char *ztr_encode_samples_C(ztr_t *z, ^~~~~~~~~~~~~~~~~~~~ ztr_translate.c:161:14: warning: 'ztr_encode_samples_A' defined but not used [-Wunused-function] static char *ztr_encode_samples_A(ztr_t *z, ^~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c deflate_interlaced.c -fPIC -DPIC -o .libs/libstaden_read_la-deflate_interlaced.o deflate_interlaced.c: In function 'calc_bit_lengths': deflate_interlaced.c:516:9: warning: variable 'map' set but not used [-Wunused-but-set-variable] int map[258]; ^~~ deflate_interlaced.c: In function 'huffman_multi_decode': deflate_interlaced.c:1760:9: warning: variable 'nc' set but not used [-Wunused-but-set-variable] int nc; ^~ deflate_interlaced.c:1759:23: warning: variable 'c' set but not used [-Wunused-but-set-variable] huffman_codes_t **c; ^ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c fpoint.c -fPIC -DPIC -o .libs/libstaden_read_la-fpoint.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-ctfCompress.lo `test -f 'ctfCompress.c' || echo './'`ctfCompress.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c seqIOABI.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOABI.o seqIOABI.c: In function 'getABIString': seqIOABI.c:259:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (off = getABIIndexEntryLW(fp, indexO, label, count, 4, &len)) { ^~~ seqIOABI.c: In function 'mfread_abi': seqIOABI.c:657:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (p = strchr(commstrp, '\n')) ^ seqIOABI.c:662:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] } while(commstrp = p); ^~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c seqIOALF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOALF.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c ctfCompress.c -fPIC -DPIC -o .libs/libstaden_read_la-ctfCompress.o ctfCompress.c: In function 'ctfCompress2': ctfCompress.c:270:80: warning: format '%d' expects argument of type 'int', but argument 7 has type 'size_t {aka long unsigned int}' [-Wformat=] printf ("compress2 : %d zeros in %d bytes, %d < 7 , %d byte, %d short total %d char for %d shrt\n", ~^ %ld ctfCompress.c:270:92: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t {aka long unsigned int}' [-Wformat=] printf ("compress2 : %d zeros in %d bytes, %d < 7 , %d byte, %d short total %d char for %d shrt\n", ~^ %ld ctfCompress.c: In function 'ctfCompress3': ctfCompress.c:607:116: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t {aka long unsigned int}' [-Wformat=] printf (" // compress3:\n// %d zeros in %d bytes, %d values coded in %d byte, %d bytes, %d short. \n// Total %d char for %d shrt\n", ~^ %ld ctfCompress.c:607:128: warning: format '%d' expects argument of type 'int', but argument 9 has type 'size_t {aka long unsigned int}' [-Wformat=] printf (" // compress3:\n// %d zeros in %d bytes, %d values coded in %d byte, %d bytes, %d short. \n// Total %d char for %d shrt\n", ~^ %ld /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-seqIOCTF.lo `test -f 'seqIOCTF.c' || echo './'`seqIOCTF.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-expFileIO.lo `test -f 'expFileIO.c' || echo './'`expFileIO.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-seqIOPlain.lo `test -f 'seqIOPlain.c' || echo './'`seqIOPlain.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c seqIOCTF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOCTF.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c expFileIO.c -fPIC -DPIC -o .libs/libstaden_read_la-expFileIO.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-misc_scf.lo `test -f 'misc_scf.c' || echo './'`misc_scf.c expFileIO.c: In function 'exp_print_mline': expFileIO.c:198:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (c = strchr(p, '\n')) ^ expFileIO.c:207:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (c = strchr(p, '\n')) { ^ expFileIO.c: In function 'opos2str': expFileIO.c:393:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (dir == 0) ^ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c seqIOPlain.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOPlain.o seqIOPlain.c: In function 'mfread_pln': seqIOPlain.c:150:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (p = strchr(type, ' ')) ^ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c misc_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c In file included from misc_scf.c:33:0: misc_scf.c: In function 'is_scf': ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') ^ misc_scf.c:151:19: note: in expansion of macro 'SCF_MAGIC' ok = (magic==SCF_MAGIC); ^~~~~~~~~ ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') ^ misc_scf.c:151:19: note: in expansion of macro 'SCF_MAGIC' ok = (magic==SCF_MAGIC); ^~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c read_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o In file included from ../io_lib/Read.h:44:0, from read_scf.c:46: read_scf.c: In function 'read_scf_header': ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') ^ read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC' if (h->magic_number != SCF_MAGIC) return -1; ^~~~~~~~~ ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') ^ read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC' if (h->magic_number != SCF_MAGIC) return -1; ^~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-sff.lo `test -f 'sff.c' || echo './'`sff.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c write_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-write_scf.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c In file included from write_scf.c:60:0: write_scf.c: In function 'mfwrite_scf': ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') ^ write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC' scf->header.magic_number = SCF_MAGIC; ^~~~~~~~~ ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') ^ write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC' scf->header.magic_number = SCF_MAGIC; ^~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-array.lo `test -f 'array.c' || echo './'`array.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c sff.c -fPIC -DPIC -o .libs/libstaden_read_la-sff.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c srf.c -fPIC -DPIC -o .libs/libstaden_read_la-srf.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-compress.lo `test -f 'compress.c' || echo './'`compress.c srf.c: In function 'get_hi_bits': srf.c:1106:59: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] val = (block->data[block->byte]) & (1<<(8-block->bit))-1; ~~~~~~~~~~~~~~~~~~~^~ srf.c:1126:21: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] & (1<<(nbits-bnum))-1; ~~~~~~~~~~~~~~~~~^~ srf.c: In function 'pack_trace_suffix': srf.c:1383:10: warning: variable 'width' set but not used [-Wunused-but-set-variable] int width = 0; ^~~~~ srf.c: In function 'partial_decode_ztr': srf.c:1604:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (chunk = ztr_read_chunk_hdr(mf)) { ^~~~~ srf.c: In function 'srf_find_trace': srf.c:2025:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(dpos, 1, item_sz, srf->fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c array.c -fPIC -DPIC -o .libs/libstaden_read_la-array.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-error.lo `test -f 'error.c' || echo './'`error.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-files.lo `test -f 'files.c' || echo './'`files.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c compress.c -fPIC -DPIC -o .libs/libstaden_read_la-compress.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c error.c -fPIC -DPIC -o .libs/libstaden_read_la-error.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c files.c -fPIC -DPIC -o .libs/libstaden_read_la-files.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-mach-io.lo `test -f 'mach-io.c' || echo './'`mach-io.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-open_trace_file.lo `test -f 'open_trace_file.c' || echo './'`open_trace_file.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c find.c -fPIC -DPIC -o .libs/libstaden_read_la-find.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-read_alloc.lo `test -f 'read_alloc.c' || echo './'`read_alloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c mach-io.c -fPIC -DPIC -o .libs/libstaden_read_la-mach-io.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c open_trace_file.c -fPIC -DPIC -o .libs/libstaden_read_la-open_trace_file.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-strings.lo `test -f 'strings.c' || echo './'`strings.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-traceType.lo `test -f 'traceType.c' || echo './'`traceType.c open_trace_file.c: In function 'find_file_tar': open_trace_file.c:143:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (cp = strchr(path, '\n')) ^~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c read_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-read_alloc.o open_trace_file.c: In function 'sff_hash_query': open_trace_file.c:537:14: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] hf->afp = hf->hfp = NULL; /* will be closed by our parent */ ^ open_trace_file.c:530:18: warning: variable 'fp_copy' set but not used [-Wunused-but-set-variable] static FILE *fp_copy = NULL; ^~~~~~~ open_trace_file.c: In function 'find_file_sff': open_trace_file.c:748:14: warning: variable 'nkey' set but not used [-Wunused-but-set-variable] uint32_t nkey, nflows, chdrlen, rhdrlen, dlen, magic; ^~~~ open_trace_file.c: In function 'find_file_dir': open_trace_file.c:914:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (cp = strrchr(file, '/')) { ^~ open_trace_file.c: In function 'open_path_mfile': open_trace_file.c:1087:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (cp = strrchr(relative_path, '/')) ^~ open_trace_file.c:1089:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (fp = find_file_dir(file, relative_path)) ^~ open_trace_file.c: In function 'find_file_sff': open_trace_file.c:798:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(index_format, 1, 8, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ open_trace_file.c: In function 'find_file_dir': open_trace_file.c:929:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magic, 1, 4, fp); ^~~~~~~~~~~~~~~~~~~~~~ open_trace_file.c:940:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magic, 1, 8, fp); ^~~~~~~~~~~~~~~~~~~~~~ open_trace_file.c:950:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magic, 1, 5, fp); ^~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c strings.c -fPIC -DPIC -o .libs/libstaden_read_la-strings.o open_trace_file.c: In function 'sff_sorted_query': open_trace_file.c:704:5: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized] fseek(fp, offset, SEEK_SET); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c traceType.c -fPIC -DPIC -o .libs/libstaden_read_la-traceType.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-xalloc.lo `test -f 'xalloc.c' || echo './'`xalloc.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-vlen.lo `test -f 'vlen.c' || echo './'`vlen.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c xalloc.c -fPIC -DPIC -o .libs/libstaden_read_la-xalloc.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c vlen.c -fPIC -DPIC -o .libs/libstaden_read_la-vlen.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo './'`jenkins_lookup3.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-mFILE.lo `test -f 'mFILE.c' || echo './'`mFILE.c vlen.c: In function 'vflen': vlen.c:86:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] for(; c=*++cp;) { ^ vlen.c:57:9: warning: variable 'i' set but not used [-Wunused-but-set-variable] int i; ^ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c hash_table.c -fPIC -DPIC -o .libs/libstaden_read_la-hash_table.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c -o libstaden_read_la-pooled_alloc.lo `test -f 'pooled_alloc.c' || echo './'`pooled_alloc.c hash_table.c: In function 'HashFileFopen': gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c jenkins_lookup3.c -fPIC -DPIC -o .libs/libstaden_read_la-jenkins_lookup3.o hash_table.c:1140:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(hf->archives[i], 1, fnamelen, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1156:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&hf->headers[i].pos, 8, 1, hf->hfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1157:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&hf->headers[i].size, 4, 1, hf->hfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1169:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&hf->footers[i].pos, 8, 1, hf->hfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1170:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&hf->footers[i].size, 4, 1, hf->hfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c: In function 'HashFileQuery': hash_table.c:1368:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(k, klen, 1, hf->hfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1369:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&headfoot, 1, 1, hf->hfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1372:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&pos, 8, 1, hf->hfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1376:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&size, 4, 1, hf->hfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c: In function 'HashFileExtract': hash_table.c:1506:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&data[pos], head->size, 1, hf->afp[head->archive_no]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1516:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&data[pos], hfi.size, 1, hf->afp[hfi.archive]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1526:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&data[pos], foot->size, 1, hf->afp[foot->archive_no]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c mFILE.c -fPIC -DPIC -o .libs/libstaden_read_la-mFILE.o jenkins_lookup3.c:654:17: warning: 'hashbig' defined but not used [-Wunused-function] static uint32_t hashbig( const void *key, size_t length, uint32_t initval) ^~~~~~~ jenkins_lookup3.c:288:17: warning: 'hashlittle' defined but not used [-Wunused-function] static uint32_t hashlittle( const void *key, size_t length, uint32_t initval) ^~~~~~~~~~ jenkins_lookup3.c:223:13: warning: 'hashword2' defined but not used [-Wunused-function] static void hashword2 ( ^~~~~~~~~ jenkins_lookup3.c:179:17: warning: 'hashword' defined but not used [-Wunused-function] static uint32_t hashword( ^~~~~~~~ mFILE.c: In function 'mfreopen': mFILE.c:194:16: warning: variable 'w' set but not used [-Wunused-but-set-variable] int r = 0, w = 0, a = 0, b = 0, x = 0, mode = 0; ^ mFILE.c: In function 'mfflush': mFILE.c:487:10: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] if (!mf->mode & MF_MODEX) ^~~~~~~~~ mFILE.c:493:2: warning: ignoring return value of 'ftruncate', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(mf->fp), ftell(mf->fp)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c pooled_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-pooled_alloc.o pooled_alloc.c: In function 'new_pool': pooled_alloc.c:37:11: warning: unused variable 'cp' [-Wunused-variable] char *cp; ^~ pooled_alloc.c:35:12: warning: unused variable 'i' [-Wunused-variable] size_t i, n = PSIZE / p->dsize; ^ pooled_alloc.c: In function 'pool_alloc': pooled_alloc.c:65:12: warning: unused variable 'i' [-Wunused-variable] size_t i; ^ pooled_alloc.c: In function 'pool_free': pooled_alloc.c:95:19: warning: unused variable 'i' [-Wunused-variable] size_t psize, i; ^ pooled_alloc.c:95:12: warning: unused variable 'psize' [-Wunused-variable] size_t psize, i; ^~~~~ /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libstaden-read.la -rpath /usr/lib64 -version-info 2:2:1 libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-ctfCompress.lo libstaden_read_la-seqIOCTF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo -lz -lcurl -lm gcc -shared .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-ctfCompress.o .libs/libstaden_read_la-seqIOCTF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o -lz -lcurl -lm -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z -Wl,relro -Wl,-soname -Wl,libstaden-read.so.1 -o .libs/libstaden-read.so.1.1.2 (cd .libs && rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1) (cd .libs && rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so) creating libstaden-read.la (cd .libs && rm -f libstaden-read.la && ln -s ../libstaden-read.la libstaden-read.la) make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' Making all in progs make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c convert_trace.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c makeSCF.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c extract_seq.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c extract_qual.c extract_seq.c: In function 'main': extract_seq.c:199:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (cp = strchr(line, '\n')) ^~ extract_qual.c: In function 'main': extract_qual.c:317:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (cp = strchr(line, '\n')) ^~ convert_trace.c:16:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] static char const rcsid[] = "$Id: convert_trace.c,v 1.12 2008-02-20 16:07:44 jkbonfield Exp $"; ^~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c extract_fastq.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c index_tar.c extract_fastq.c: In function 'main': extract_fastq.c:141:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (cp = strchr(line, '\n')) ^~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c scf_dump.c index_tar.c: In function 'main': index_tar.c:72:21: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(member, 1, size > 256 ? 256 : size, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ index_tar.c:82:17: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(member, 1, size > 256 ? 256 : size, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c scf_info.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c scf_update.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c get_comment.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c hash_tar.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c hash_extract.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c hash_list.c hash_tar.c: In function 'load_map': hash_tar.c:78:5: warning: implicit declaration of function 'close'; did you mean 'pclose'? [-Wimplicit-function-declaration] close(fp); ^~~~~ pclose hash_tar.c: In function 'main': hash_tar.c:273:11: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ hash_tar.c: In function 'accumulate': hash_tar.c:136:21: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(member, 1, size > 256 ? 256 : size, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_tar.c:146:17: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(member, 1, size > 256 ? 256 : size, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_tar.c:204:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ hash_extract.c: In function 'extract': hash_extract.c:20:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (data = HashFileExtract(hf, file, &len)) { ^~~~ hash_extract.c: In function 'main': hash_extract.c:74:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (c = strchr(file, '\n')) ^ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c trace_dump.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c hash_sff.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c append_sff.c hash_tar.c: In function 'main': hash_tar.c:327:13: warning: 'hf' may be used uninitialized in this function [-Wmaybe-uninitialized] realloc(hf->headers, (hf->nheaders+1) * ~~^~~~~~~~~ hash_sff.c: In function 'main': hash_sff.c:207:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (len = fread(block, 1, 8192, fp)) { ^~~ hash_sff.c:230:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(hdr, 1, 31, fp); ^~~~~~~~~~~~~~~~~~~~~ hash_sff.c:258:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(hdr, 1, 31, fpout); ^~~~~~~~~~~~~~~~~~~~~~~~ append_sff.c: In function 'main': append_sff.c:116:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(chdr, 1, 31, fpout); ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c ztr_dump.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c srf_dump_all.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c srf_index_hash.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c srf_extract_linear.c srf_dump_all.c: In function 'dump_solexa': srf_dump_all.c:309:35: warning: pointer targets in passing argument 3 of 'dump_conf4_solexa' differ in signedness [-Wpointer-sign] dump_conf4_solexa(files[1], seq, chunks[0]->data+1, chunks[0]->dlength-1); ^~~~~~ srf_dump_all.c:227:6: note: expected 'signed char *' but argument is of type 'char *' void dump_conf4_solexa(FILE *fp, char *seq, signed char *bytes, int nbytes) { ^~~~~~~~~~~~~~~~~ srf_dump_all.c:320:10: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] chunks[i]->data+2, chunks[i]->dlength-2); ^~~~~~ srf_dump_all.c:194:6: note: expected 'unsigned char *' but argument is of type 'char *' void dump_samples4_solexa(FILE *fp, int lane, int tile, int x, int y, ^~~~~~~~~~~~~~~~~~~~ srf_dump_all.c:333:10: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] chunks[i]->data+2, chunks[i]->dlength-2); ^~~~~~ srf_dump_all.c:194:6: note: expected 'unsigned char *' but argument is of type 'char *' void dump_samples4_solexa(FILE *fp, int lane, int tile, int x, int y, ^~~~~~~~~~~~~~~~~~~~ srf_dump_all.c:346:10: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] chunks[i]->data+2, chunks[i]->dlength-2); ^~~~~~ srf_dump_all.c:194:6: note: expected 'unsigned char *' but argument is of type 'char *' void dump_samples4_solexa(FILE *fp, int lane, int tile, int x, int y, ^~~~~~~~~~~~~~~~~~~~ srf_dump_all.c: In function 'read_filter_from_file': srf_dump_all.c:484:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable] long lStartPos; /* Offset of start of current line */ ^~~~~~~~~ srf_dump_all.c:483:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable] long lLineLen; /* Current line length */ ^~~~~~~~ srf_dump_all.c:506:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ srf_index_hash.c: In function 'main': srf_index_hash.c:138:5: warning: ignoring return value of 'ftruncate', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(srf->fp), ftello(srf->fp)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c srf_extract_hash.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c srf2fastq.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c srf2fasta.c srf2fastq.c: In function 'ztr2fastq': srf2fastq.c:369:17: warning: variable 'start' set but not used [-Wunused-but-set-variable] int start, length; ^~~~~ srf2fastq.c:480:21: warning: variable 'start' set but not used [-Wunused-but-set-variable] int start, length; ^~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c srf_filter.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c srf_info.c srf_filter.c: In function 'read_filter_from_file': srf_filter.c:164:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable] long lStartPos; /* Offset of start of current line */ ^~~~~~~~~ srf_filter.c:163:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable] long lLineLen; /* Current line length */ ^~~~~~~~ srf2fastq.c:248:13: warning: 'regn' may be used uninitialized in this function [-Wmaybe-uninitialized] regn_t *regn; ^~~~ srf_filter.c: In function 'dump_read_filter': srf_filter.c:457:33: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64_t {aka long unsigned int}' [-Wformat=] printf("\tread[%d] = %s\n", hi->data.i, hi->key); ~^ ~~~~~~~~~~ %ld srf_filter.c: In function 'add_readpair_region': srf_filter.c:587:16: warning: pointer targets in assignment differ in signedness [-Wpointer-sign] c.data = data; ^ srf_filter.c: In function 'srf_filter': srf_filter.c:699:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (chunk = ztr_read_chunk_hdr(in_srf->mf)) { ^~~~~ srf_filter.c:788:23: warning: left-hand operand of comma expression has no effect [-Wunused-value] stderr, "Error making trace header.\nExiting.\n"; ^ srf_filter.c:788:23: warning: statement with no effect [-Wunused-value] srf_filter.c:794:66: warning: pointer targets in passing argument 3 of 'srf_construct_trace_hdr' differ in signedness [-Wpointer-sign] srf_construct_trace_hdr(&out_srf->th, in_srf->th.id_prefix, trace_hdr, trace_hdr_size); ^~~~~~~~~ In file included from srf_filter.c:47:0: ../io_lib/srf.h:144:18: note: expected 'unsigned char *' but argument is of type 'char *' srf_trace_hdr_t *srf_construct_trace_hdr(srf_trace_hdr_t *th, ^~~~~~~~~~~~~~~~~~~~~~~ srf_filter.c:894:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (chunk = ztr_read_chunk_hdr(in_srf->mf)) { ^~~~~ srf_filter.c:980:76: warning: pointer targets in passing argument 4 of 'srf_construct_trace_body' differ in signedness [-Wpointer-sign] srf_construct_trace_body(&new_tb, name+strlen(in_srf->th.id_prefix), -1, mf->data, mf->size, old_tb.flags); ^~ In file included from srf_filter.c:47:0: ../io_lib/srf.h:152:19: note: expected 'unsigned char *' but argument is of type 'char *' srf_trace_body_t *srf_construct_trace_body(srf_trace_body_t *th, ^~~~~~~~~~~~~~~~~~~~~~~~ srf_filter.c: In function 'read_filter_from_file': srf_filter.c:186:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ srf_info.c: In function 'partial_decode_ztr2': srf_info.c:411:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (chunk = ztr_read_chunk_hdr(mf)) { ^~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -c srf_list.c /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm srf_filter.c: In function 'srf_filter': srf_filter.c:970:19: warning: 'output_trace_header' may be used uninitialized in this function [-Wmaybe-uninitialized] if( output_trace_header ) { ^ srf_list.c: In function 'count_file': srf_list.c:75:19: warning: unused variable 'data' [-Wunused-variable] unsigned char data[16]; ^~~~ srf_list.c:74:22: warning: unused variable 'i' [-Wunused-variable] int item_sz = 9, i; ^ srf_list.c:73:11: warning: variable 'ipos' set but not used [-Wunused-but-set-variable] off_t ipos, skip; ^~~~ srf_list.c:72:13: warning: unused variable 'count' [-Wunused-variable] int64_t count = 0; ^~~~~ srf_list.c: In function 'main': srf_list.c:158:19: warning: format '%d' expects argument of type 'int', but argument 3 has type 'int64_t {aka long int}' [-Wformat=] printf("%s: %d sequences\n", argv[i], c); ~^ %ld /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o makeSCF makeSCF.o ../io_lib/libstaden-read.la -lm mkdir .libs /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o extract_seq extract_seq.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/convert_trace convert_trace.o ../io_lib/.libs/libstaden-read.so -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o extract_qual extract_qual.o ../io_lib/libstaden-read.la -lm creating convert_trace /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o extract_fastq extract_fastq.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/makeSCF makeSCF.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/extract_seq extract_seq.o ../io_lib/.libs/libstaden-read.so -lm creating makeSCF /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o index_tar index_tar.o -lm creating extract_seq gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/extract_qual extract_qual.o ../io_lib/.libs/libstaden-read.so -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o scf_dump scf_dump.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/extract_fastq extract_fastq.o ../io_lib/.libs/libstaden-read.so -lm creating extract_qual /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o scf_info scf_info.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o index_tar index_tar.o -lm creating extract_fastq /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o scf_update scf_update.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o get_comment get_comment.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/scf_dump scf_dump.o ../io_lib/.libs/libstaden-read.so -lm creating scf_dump /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_tar hash_tar.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/scf_info scf_info.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/scf_update scf_update.o ../io_lib/.libs/libstaden-read.so -lm creating scf_info gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/get_comment get_comment.o ../io_lib/.libs/libstaden-read.so -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_extract hash_extract.o ../io_lib/libstaden-read.la -lm creating scf_update creating get_comment /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_list hash_list.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o trace_dump trace_dump.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_tar hash_tar.o ../io_lib/.libs/libstaden-read.so -lm creating hash_tar /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_sff hash_sff.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_extract hash_extract.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_list hash_list.o ../io_lib/.libs/libstaden-read.so -lm creating hash_extract gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/trace_dump trace_dump.o ../io_lib/.libs/libstaden-read.so -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o append_sff append_sff.o ../io_lib/libstaden-read.la -lm creating hash_list creating trace_dump /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ztr_dump ztr_dump.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_dump_all srf_dump_all.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_sff hash_sff.o ../io_lib/.libs/libstaden-read.so -lm creating hash_sff /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_index_hash srf_index_hash.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/append_sff append_sff.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ztr_dump ztr_dump.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_dump_all srf_dump_all.o ../io_lib/.libs/libstaden-read.so -lm creating append_sff /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_extract_linear srf_extract_linear.o ../io_lib/libstaden-read.la -lm creating ztr_dump creating srf_dump_all /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_extract_hash srf_extract_hash.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf2fastq srf2fastq.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_index_hash srf_index_hash.o ../io_lib/.libs/libstaden-read.so -lm creating srf_index_hash /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf2fasta srf2fasta.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_extract_linear srf_extract_linear.o ../io_lib/.libs/libstaden-read.so -lm creating srf_extract_linear gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf2fastq srf2fastq.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_extract_hash srf_extract_hash.o ../io_lib/.libs/libstaden-read.so -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_filter srf_filter.o ../io_lib/libstaden-read.la -lm creating srf2fastq creating srf_extract_hash /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_info srf_info.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf2fasta srf2fasta.o ../io_lib/.libs/libstaden-read.so -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm creating srf2fasta gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_filter srf_filter.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_info srf_info.o ../io_lib/.libs/libstaden-read.so -lm creating srf_filter gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z -Wl,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_list srf_list.o ../io_lib/.libs/libstaden-read.so -lm creating srf_info creating srf_list make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' Making all in tests make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Ffu7dJ + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64 ++ dirname /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64 + cd io_lib-1.12.4 + rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64 + make install DESTDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64 Making install in io_lib make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' test -z "/usr/lib64" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/lib64" /bin/sh ../libtool --mode=install /usr/bin/install -c 'libstaden-read.la' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/lib64/libstaden-read.la' /usr/bin/install -c .libs/libstaden-read.so.1.1.2 /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/lib64/libstaden-read.so.1.1.2 (cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/lib64 && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so.1 || { rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1; }; }) (cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/lib64 && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so; }; }) /usr/bin/install -c .libs/libstaden-read.lai /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/lib64/libstaden-read.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' Making install in progs make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'convert_trace' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/convert_trace' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/convert_trace /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/convert_trace /bin/sh ../libtool --mode=install /usr/bin/install -c 'makeSCF' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/makeSCF' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/makeSCF /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/makeSCF /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_seq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/extract_seq' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/extract_seq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/extract_seq /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_qual' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/extract_qual' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/extract_qual /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/extract_qual /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/extract_fastq' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/extract_fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/extract_fastq /bin/sh ../libtool --mode=install /usr/bin/install -c 'index_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/index_tar' /usr/bin/install -c index_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/index_tar /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/scf_dump' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/scf_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/scf_dump /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/scf_info' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/scf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/scf_info /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_update' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/scf_update' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/scf_update /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/scf_update /bin/sh ../libtool --mode=install /usr/bin/install -c 'get_comment' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/get_comment' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/get_comment /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/get_comment /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/hash_tar' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/hash_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/hash_tar /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_extract' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/hash_extract' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/hash_extract /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/hash_extract /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/hash_list' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/hash_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/hash_list /bin/sh ../libtool --mode=install /usr/bin/install -c 'trace_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/trace_dump' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/trace_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/trace_dump /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/hash_sff' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/hash_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/hash_sff /bin/sh ../libtool --mode=install /usr/bin/install -c 'append_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/append_sff' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/append_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/append_sff /bin/sh ../libtool --mode=install /usr/bin/install -c 'ztr_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/ztr_dump' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/ztr_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/ztr_dump /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_dump_all' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_dump_all' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_dump_all /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_dump_all /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_index_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_index_hash' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_index_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_index_hash /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_extract_linear' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_extract_linear' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_extract_linear /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_extract_linear /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_extract_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_extract_hash' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_extract_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_extract_hash /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf2fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf2fastq' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf2fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf2fastq /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf2fasta' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf2fasta' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf2fasta /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf2fasta /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_filter' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_filter' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_filter /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_filter /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_info' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_info /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_list' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/srf_list make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' Making install in tests make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin" /usr/bin/install -c 'staden-io_lib-config' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/bin/staden-io_lib-config' test -z "/usr/share/man/man1" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man1" /usr/bin/install -c -m 644 './man/man1/srf_index_hash.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man1/srf_index_hash.1' /usr/bin/install -c -m 644 './man/man1/srf_info.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man1/srf_info.1' /usr/bin/install -c -m 644 './man/man1/srf_list.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man1/srf_list.1' /usr/bin/install -c -m 644 './man/man1/srf2fasta.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man1/srf2fasta.1' /usr/bin/install -c -m 644 './man/man1/srf2fastq.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man1/srf2fastq.1' test -z "/usr/share/man/man3" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3" /usr/bin/install -c -m 644 './man/man3/read_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/read_scf_header.3' /usr/bin/install -c -m 644 './man/man3/read_allocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/read_allocate.3' /usr/bin/install -c -m 644 './man/man3/ExperimentFile.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/ExperimentFile.3' /usr/bin/install -c -m 644 './man/man3/write_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/write_reading.3' /usr/bin/install -c -m 644 './man/man3/write_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/write_scf.3' /usr/bin/install -c -m 644 './man/man3/read_deallocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/read_deallocate.3' /usr/bin/install -c -m 644 './man/man3/fwrite_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/fwrite_reading.3' /usr/bin/install -c -m 644 './man/man3/read2scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/read2scf.3' /usr/bin/install -c -m 644 './man/man3/scf2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/scf2read.3' /usr/bin/install -c -m 644 './man/man3/fwrite_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/fwrite_scf.3' /usr/bin/install -c -m 644 './man/man3/write_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/write_scf_header.3' /usr/bin/install -c -m 644 './man/man3/read_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/read_reading.3' /usr/bin/install -c -m 644 './man/man3/read_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/read_scf.3' /usr/bin/install -c -m 644 './man/man3/exp2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/exp2read.3' /usr/bin/install -c -m 644 './man/man3/fread_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/fread_reading.3' /usr/bin/install -c -m 644 './man/man3/read2exp.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/read2exp.3' /usr/bin/install -c -m 644 './man/man3/fread_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man3/fread_scf.3' test -z "/usr/share/man/man4" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man4" /usr/bin/install -c -m 644 './man/man4/Read.4' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/man/man4/Read.4' test -z "/usr/include/io_lib" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib" /usr/bin/install -c -m 644 'io_lib/Read.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/Read.h' /usr/bin/install -c -m 644 'io_lib/scf_extras.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/scf_extras.h' /usr/bin/install -c -m 644 'io_lib/translate.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/translate.h' /usr/bin/install -c -m 644 'io_lib/abi.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/abi.h' /usr/bin/install -c -m 644 'io_lib/fpoint.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/fpoint.h' /usr/bin/install -c -m 644 'io_lib/seqIOABI.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/seqIOABI.h' /usr/bin/install -c -m 644 'io_lib/alf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/alf.h' /usr/bin/install -c -m 644 'io_lib/seqIOCTF.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/seqIOCTF.h' /usr/bin/install -c -m 644 'io_lib/expFileIO.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/expFileIO.h' /usr/bin/install -c -m 644 'io_lib/plain.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/plain.h' /usr/bin/install -c -m 644 'io_lib/scf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/scf.h' /usr/bin/install -c -m 644 'io_lib/sff.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/sff.h' /usr/bin/install -c -m 644 'io_lib/array.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/array.h' /usr/bin/install -c -m 644 'io_lib/compress.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/compress.h' /usr/bin/install -c -m 644 'io_lib/error.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/error.h' /usr/bin/install -c -m 644 'io_lib/mach-io.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/mach-io.h' /usr/bin/install -c -m 644 'io_lib/misc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/misc.h' /usr/bin/install -c -m 644 'io_lib/open_trace_file.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/open_trace_file.h' /usr/bin/install -c -m 644 'io_lib/tar_format.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/tar_format.h' /usr/bin/install -c -m 644 'io_lib/traceType.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/traceType.h' /usr/bin/install -c -m 644 'io_lib/xalloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/xalloc.h' /usr/bin/install -c -m 644 'io_lib/mFILE.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/mFILE.h' /usr/bin/install -c -m 644 'io_lib/stdio_hack.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/stdio_hack.h' /usr/bin/install -c -m 644 'io_lib/vlen.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/vlen.h' /usr/bin/install -c -m 644 'io_lib/hash_table.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/hash_table.h' /usr/bin/install -c -m 644 'io_lib/jenkins_lookup3.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/jenkins_lookup3.h' /usr/bin/install -c -m 644 'io_lib/os.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/os.h' /usr/bin/install -c -m 644 'io_lib/compression.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/compression.h' /usr/bin/install -c -m 644 'io_lib/ztr.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/ztr.h' /usr/bin/install -c -m 644 'io_lib/deflate_interlaced.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/deflate_interlaced.h' /usr/bin/install -c -m 644 'io_lib/srf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/srf.h' /usr/bin/install -c -m 644 'io_lib/pooled_alloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/pooled_alloc.h' /usr/bin/install -c -m 644 'io_lib_config.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/include/io_lib/io_lib_config.h' make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' + find /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64 -name '*.la' -exec rm -f '{}' ';' + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: staden-io_lib-1.12.4-13.fc28.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.VFIDXN + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + DOCDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/doc/staden-io_lib + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/doc/staden-io_lib + cp -pr README /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/doc/staden-io_lib + cp -pr COPYRIGHT /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/doc/staden-io_lib + cp -pr CHANGES /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/doc/staden-io_lib + cp -pr docs/ /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64/usr/share/doc/staden-io_lib + exit 0 Provides: libstaden-read.so.1()(64bit) staden-io_lib = 1.12.4-13.fc28 staden-io_lib(riscv-64) = 1.12.4-13.fc28 Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libcurl.so.4()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libstaden-read.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: staden-io_lib-devel-1.12.4-13.fc28.riscv64 Provides: staden-io_lib-devel = 1.12.4-13.fc28 staden-io_lib-devel(riscv-64) = 1.12.4-13.fc28 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/sh libstaden-read.so.1()(64bit) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64 Wrote: /builddir/build/SRPMS/staden-io_lib-1.12.4-13.fc28.src.rpm Wrote: /builddir/build/RPMS/riscv64/staden-io_lib-1.12.4-13.fc28.riscv64.rpm Wrote: /builddir/build/RPMS/riscv64/staden-io_lib-devel-1.12.4-13.fc28.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.s43FaO + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-13.fc28.riscv64 + exit 0 + touch /buildok + cleanup + set +e + sync + sleep 5 + sync + poweroff Terminated ++ cleanup ++ set +e ++ sync Terminated +++ cleanup +++ set +e +++ sync +++ sleep 5 +++ sync +++ poweroff