Type: | Package |
Title: | A Comprehensive Collection of Health and Human Motion Datasets |
Version: | 0.1.0 |
Maintainer: | Oscar Alejandro Sialer Gallo <alejandro.sialer.gallo@gmail.com> |
Description: | Provides a broad collection of datasets focused on health, biomechanics, and human motion. It includes clinical, physiological, and kinematic information from diverse sources, covering aspects such as surgery outcomes, vital signs, rheumatoid arthritis, osteoarthritis, accelerometry, gait analysis, motion sensing, and biomechanics experiments. Designed for researchers, analysts, and students, the package facilitates exploration and analysis of data related to health monitoring, physical activity, and rehabilitation. |
License: | MIT + file LICENSE |
URL: | https://github.com/alejandrosialer/healthmotionR, https://alejandrosialer.github.io/healthmotionR/ |
BugReports: | https://github.com/alejandrosialer/healthmotionR/issues |
Encoding: | UTF-8 |
Suggests: | ggplot2, dplyr, testthat (≥ 3.0.0), knitr, rmarkdown |
RoxygenNote: | 7.3.2 |
Config/testthat/edition: | 3 |
VignetteBuilder: | knitr |
NeedsCompilation: | no |
Packaged: | 2025-09-30 01:30:10 UTC; ALEJANDRO SIALER |
Author: | Oscar Alejandro Sialer Gallo [aut, cre] |
Depends: | R (≥ 3.5.0) |
Repository: | CRAN |
Date/Publication: | 2025-10-06 08:00:08 UTC |
healthmotionR: A Comprehensive Collection of Health and Human Motion Datasets
Description
This package provides a broad collection of datasets focused on health, biomechanics, and human motion. It includes clinical, physiological, and kinematic information from diverse sources, covering aspects such as surgery outcomes, vital signs, rheumatoid arthritis, osteoarthritis, accelerometry, gait analysis, motion sensing, and biomechanics experiments.
Details
healthmotionR: A Comprehensive Collection of Health and Human Motion Datasets
A Comprehensive Collection of Health and Human Motion Datasets.
Author(s)
Maintainer: Oscar Alejandro Sialer Gallo alejandro.sialer.gallo@gmail.com
See Also
Useful links:
Atrial Fibrillation Multivariate Time Series
Description
This dataset, AtrialFibrillation_list, is a multivariate time series (MTS) consisting of two-channel ECG recordings of atrial fibrillation. The database was created from data used in the Computers in Cardiology Challenge 2004.
Usage
data(AtrialFibrillation_list)
Format
A list with 2 components:
- data
A list of 30 numeric matrices, each of dimension 640 × 2, representing two-channel ECG recordings.
- classes
A numeric vector of length 30, indicating the class labels associated with each multivariate time series.
Details
The dataset name has been kept as 'AtrialFibrillation_list' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'list' indicates that the dataset is stored as a list object. The original content has not been modified in any way.
Source
Data taken from the mlmts package, version 1.1.2.
Basic Motions Multivariate Time Series
Description
This dataset, BasicMotions_list, is a multivariate time series (MTS) of four students performing four different activities while wearing a smart watch.
Usage
data(BasicMotions_list)
Format
A list with 2 components:
- data
A list of 80 numeric matrices, each of dimension 100 × 6, representing six-channel sensor recordings from the smart watch.
- classes
A numeric vector of length 80, indicating the class labels associated with each multivariate time series.
Details
The dataset name has been kept as 'BasicMotions_list' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'list' indicates that the dataset is stored as a list object. The original content has not been modified in any way.
Source
Data taken from the mlmts package, version 1.1.2.
Finger Movements Multivariate Time Series
Description
This dataset, FingerMovements_char, refers to multivariate time series (MTS) indicating the finger movements of a subject while typing at a computer keyboard. In this version, the dataset is represented as a character string with instructions on how to obtain the full dataset from an external package.
Usage
data(FingerMovements_char)
Format
A character vector of length 1, containing instructions for accessing the full dataset from the ueadata1 package.
Details
The dataset name has been kept as 'FingerMovements_char' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'char' indicates that the dataset is stored as a character object. The original content has not been modified in any way.
Source
Data taken from the mlmts package, version 1.1.2.
Hand Movement Direction Multivariate Time Series
Description
This dataset, HandMovementDir_char, refers to multivariate time series (MTS) indicating the movement of a joystick by two subjects with their hand and wrist. In this version, the dataset is represented as a character string with instructions on how to obtain the full dataset from an external package.
Usage
data(HandMovementDir_char)
Format
A character vector of length 1, containing instructions for accessing the full dataset from the ueadata1 package.
Details
The dataset name has been kept as 'HandMovementDir_char' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'char' indicates that the dataset is stored as a character object. The original content has not been modified in any way.
Source
Data taken from the mlmts package, version 1.1.2.
Heartbeat Multivariate Time Series
Description
This dataset, Heartbeat_char, refers to multivariate time series (MTS) indicating heart sound from healthy patients and pathological patients (with a confirmed cardiac diagnosis). In this version, the dataset is represented as a character string with instructions on how to obtain the full dataset from an external package.
Usage
data(Heartbeat_char)
Format
A character vector of length 1, containing instructions for accessing the full dataset from the ueadata1 package.
Details
The dataset name has been kept as 'Heartbeat_char' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'char' indicates that the dataset is stored as a character object. The original content has not been modified in any way.
Source
Data taken from the mlmts package, version 1.1.2.
KinData – Kinematics Dataset
Description
This dataset, KinData_df
, is a data frame containing part of the motion capture
dataset freely available in the publication by Ansuini et al. (2015). It provides
detailed kinematic measurements of grasping movements across multiple conditions.
Usage
data(KinData_df)
Format
A data frame with the following variables:
- Grip_Aperture_01
numeric
- Grip_Aperture_02
numeric
- Grip_Aperture_03
numeric
- Grip_Aperture_04
numeric
- Grip_Aperture_05
numeric
- Grip_Aperture_06
numeric
- Grip_Aperture_07
numeric
- Grip_Aperture_08
numeric
- Grip_Aperture_09
numeric
- Grip_Aperture_10
numeric
- Object.Size
numeric
- Wrist_Height_01
numeric
- Wrist_Height_02
numeric
- Wrist_Height_03
numeric
- Wrist_Height_04
numeric
- Wrist_Height_05
numeric
- Wrist_Height_06
numeric
- Wrist_Height_07
numeric
- Wrist_Height_08
numeric
- Wrist_Height_09
numeric
- Wrist_Height_10
numeric
- Wrist_Velocity_01
numeric
- Wrist_Velocity_02
numeric
- Wrist_Velocity_03
numeric
- Wrist_Velocity_04
numeric
- Wrist_Velocity_05
numeric
- Wrist_Velocity_06
numeric
- Wrist_Velocity_07
numeric
- Wrist_Velocity_08
numeric
- Wrist_Velocity_09
numeric
- Wrist_Velocity_10
numeric
- x_finger_plane_01
numeric
- x_finger_plane_02
numeric
- x_finger_plane_03
numeric
- x_finger_plane_04
numeric
- x_finger_plane_05
numeric
- x_finger_plane_06
numeric
- x_finger_plane_07
numeric
- x_finger_plane_08
numeric
- x_finger_plane_09
numeric
- x_finger_plane_10
numeric
- x_index_01
numeric
- x_index_02
numeric
- x_index_03
numeric
- x_index_04
numeric
- x_index_05
numeric
- x_index_06
numeric
- x_index_07
numeric
- x_index_08
numeric
- x_index_09
numeric
- x_index_10
numeric
- x_thumb_01
numeric
- x_thumb_02
numeric
- x_thumb_03
numeric
- x_thumb_04
numeric
- x_thumb_05
numeric
- x_thumb_06
numeric
- x_thumb_07
numeric
- x_thumb_08
numeric
- x_thumb_09
numeric
- x_thumb_10
numeric
- y_finger_plane_01
numeric
- y_finger_plane_02
numeric
- y_finger_plane_03
numeric
- y_finger_plane_04
numeric
- y_finger_plane_05
numeric
- y_finger_plane_06
numeric
- y_finger_plane_07
numeric
- y_finger_plane_08
numeric
- y_finger_plane_09
numeric
- y_finger_plane_10
numeric
- y_index_01
numeric
- y_index_02
numeric
- y_index_03
numeric
- y_index_04
numeric
- y_index_05
numeric
- y_index_06
numeric
- y_index_07
numeric
- y_index_08
numeric
- y_index_09
numeric
- y_index_10
numeric
- y_thumb_01
numeric
- y_thumb_02
numeric
- y_thumb_03
numeric
- y_thumb_04
numeric
- y_thumb_05
numeric
- y_thumb_06
numeric
- y_thumb_07
numeric
- y_thumb_08
numeric
- y_thumb_09
numeric
- y_thumb_10
numeric
- z_finger_plane_01
numeric
- z_finger_plane_02
numeric
- z_finger_plane_03
numeric
- z_finger_plane_04
numeric
- z_finger_plane_05
numeric
- z_finger_plane_06
numeric
- z_finger_plane_07
numeric
- z_finger_plane_08
numeric
- z_finger_plane_09
numeric
- z_finger_plane_10
numeric
- z_index_01
numeric
- z_index_02
numeric
- z_index_03
numeric
- z_index_04
numeric
- z_index_05
numeric
- z_index_06
numeric
- z_index_07
numeric
- z_index_08
numeric
- z_index_09
numeric
- z_index_10
numeric
- z_thumb_01
numeric
- z_thumb_02
numeric
- z_thumb_03
numeric
- z_thumb_04
numeric
- z_thumb_05
numeric
- z_thumb_06
numeric
- z_thumb_07
numeric
- z_thumb_08
numeric
- z_thumb_09
numeric
- z_thumb_10
numeric
Details
The dataset includes information on wrist velocity, grip aperture, wrist height,
and three-dimensional coordinates of the index finger, thumb, and finger plane.
Each measurement is recorded across 10 equally spaced points of the movement
trajectory. The variable Object.Size
indicates the size of the object being grasped.
The dataset name has been kept as KinData_df
to avoid confusion with other datasets
in the R ecosystem. This naming convention helps distinguish this dataset as part of the
healthmotionR package and assists users in identifying its specific characteristics.
The suffix _df
indicates that the dataset is a data frame. The original content has
not been modified in any way.
Source
Data taken from the PredPsych package version 0.4.
StandWalkJump Multivariate Time Series
Description
This dataset, StandWalkJump_list, is a multivariate time series (MTS) involving short-duration ECG signals recorded from a healthy 25-year-old male performing different physical activities. The dataset is structured to allow analysis of physiological responses across 27 separate trials.
Usage
data(StandWalkJump_list)
Format
A list with 2 components:
- data
A list of 27 numeric matrices, each of dimension 2500 × 4, representing ECG signals recorded during different physical activities.
- classes
Numeric vector of length 27 indicating the activity label corresponding to each trial.
Details
The dataset name has been kept as 'StandWalkJump_list' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'list' indicates that the dataset is a list structure. The original content has not been modified in any way.
Source
Data taken from the mlmts package, version 1.1.2.
Stepping and Heart Rate
Description
This dataset, Stepping_df, is a data frame containing heart rate measurements of subjects performing stepping exercises at different heights and frequencies. Each subject's resting heart rate was measured before a trial (HRInit) and after stepping (HRFinal). Step heights include 5.75 inches (Low) and 11.5 inches (High), and stepping frequencies include 14 steps/min (Slow), 21 steps/min (Medium), and 28 steps/min (Fast), resulting in six possible height/frequency combinations. Each trial lasted three minutes, with subjects kept on pace by an electric metronome and heart rate counted by an experimenter.
Usage
data(Stepping_df)
Format
A data frame with 30 observations and 6 variables:
- Order
Numeric vector indicating the order of the measurement.
- Block
Numeric vector indicating the block or session number.
- Height
Factor with 2 levels indicating step height (1 = Low, 2 = High).
- Freq
Factor with 3 levels indicating stepping frequency (1 = Slow, 2 = Medium, 3 = Fast).
- HRInit
Numeric vector indicating the subject's heart rate before the trial (beats per minute).
- HRFinal
Numeric vector indicating the subject's heart rate after the trial (beats per minute).
Details
The dataset name has been kept as 'Stepping_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.
Source
Data taken from the sur package version 1.0.4.
Accelerometer Data Example 2
Description
Data example from the 2003-2004 National Health and Nutrition Examination Survey (NHANES)
dataset. This example includes 184 individuals, giving 1,288 daily profiles. It only includes
valid subjects with at least three complete days, obtained as a subset of acceldata_list
using the function valid.subjects()
.
Usage
data(acceldata2_list)
Format
A list with 4 components:
- PA
An integer matrix with 1,288 rows (daily profiles) and 1,440 columns (minute-by-minute accelerometer counts).
- label
A data frame with 1,288 observations and 3 variables:
- id
Integer identifier of the profile
- day
Integer indicating the day label
- personid2
Integer providing an alternative identifier of the individual
- flag
A numeric matrix with the same dimensions as
PA
, containing quality indicators (e.g., 0 = valid, 1 = flagged).- demo
A data frame with 184 observations and 5 variables:
- personid
Integer identifying the participant
- age
Integer indicating age
- sex
Factor with 2 levels indicating sex
- bmi
Numeric variable with body mass index
- race
Factor with 2 levels indicating race
Details
The dataset name has been kept as 'acceldata2_list' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'list' indicates that the dataset is stored as a list containing multiple components. The original content has not been modified in any way.
Source
Data taken from the accelmissing package version 2.2.
Accelerometer Data Example
Description
Data example from the 2003-2004 National Health and Nutrition Examination Survey (NHANES) dataset. This example only includes 218 individuals, which gives 1,526 daily profiles, from a total of 7,176 participants in the physical activity survey.
Usage
data(acceldata_list)
Format
A list with 4 components:
- PA
A data frame with 1,526 observations and 1,440 variables. Each row corresponds to a daily profile, with columns V1 to V1440 representing accelerometer counts recorded minute by minute throughout the day.
- label
A data frame with 1,526 observations and 3 variables:
- personid
Integer identifying the individual
- daylabel
Integer indicating the label of the day
- personid2
Integer providing an alternative identifier of the individual
- flag
A data frame with 1,526 observations and 1,440 variables. The structure mirrors that of PA, with values indicating data quality (e.g., 0 = valid, 1 = flagged).
- demo
A data frame containing demographic information for the 218 participants with 5 variables:
- personid
Integer identifying the participant
- age
Integer indicating age
- sex
Factor with 2 levels indicating sex
- bmi
Numeric variable with body mass index
- race
Factor with 2 levels indicating race
Details
The dataset name has been kept as 'acceldata_list' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'list' indicates that the dataset is stored as a list containing multiple data frames. The original content has not been modified in any way.
Source
Data taken from the accelmissing package version 2.2.
Accelerometer Data Example with Imputations
Description
This dataset, accelimp_list, is a list containing imputed accelerometer data from the
2003-2004 National Health and Nutrition Examination Survey (NHANES). It includes
184 individuals, resulting in 1,288 daily profiles obtained after applying
accel.impute()
to the raw accelerometer data.
Usage
data(accelimp_list)
Format
A list with 1 component:
- imp1
A numeric matrix with 1,288 rows (daily profiles) and 1,440 columns (minute-by-minute accelerometer counts), containing the imputed accelerometer data.
Details
The dataset name has been kept as 'accelimp_list' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'list' indicates that the dataset is stored as a list. The original content has not been modified in any way.
Source
Data taken from the accelmissing package version 2.2.
Vital Signs Dataset
Description
This dataset, admiral_vs_tbl_df, is a tibble data frame containing a CDISC SDTM VS dataset from the CDISC pilot project. It includes study identifiers, subject identifiers, vital signs test codes, test names, measurement results, visit information, and related metadata. The dataset follows the structure of clinical trial data and provides standardized vital signs information.
Usage
data(admiral_vs_tbl_df)
Format
A data frame with 29,643 observations and 24 variables:
- STUDYID
Character string indicating the study identifier
- DOMAIN
Character string indicating the domain abbreviation
- USUBJID
Character string indicating the unique subject identifier
- VSSEQ
Numeric value indicating the sequence number
- VSTESTCD
Character string indicating the vital signs test short name
- VSTEST
Character string indicating the vital signs test name
- VSPOS
Character string indicating the subject’s position during measurement
- VSORRES
Character string indicating the result or finding in original units
- VSORRESU
Character string indicating the original measurement units
- VSSTRESC
Character string indicating the character result/finding in standard format
- VSSTRESN
Numeric value indicating the result/finding in standard units
- VSSTRESU
Character string indicating the standard units
- VSSTAT
Character string indicating the completion status
- VSLOC
Character string indicating the location of the measurement
- VSBLFL
Character string indicating whether the value is a baseline flag
- VISITNUM
Numeric value indicating the visit number
- VISIT
Character string indicating the visit name
- VISITDY
Numeric value indicating the planned study day of the visit
- VSDTC
Character string indicating the date/time of measurements
- VSDY
Numeric value indicating the study day of vital signs
- VSTPT
Character string indicating the planned time point name
- VSTPTNUM
Numeric value indicating the planned time point number
- VSELTM
Character string indicating the planned elapsed time from the time point reference
- VSTPTREF
Character string indicating the time point reference
Details
The dataset name has been kept as 'admiral_vs_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.
Source
Data taken from the admiral.test package version 0.7.0.
Hip and Knee Angle while Walking
Description
This dataset, angle_walk_array, is a 3-dimensional array containing hip and knee angle data (in degrees) for 39 boys measured during walking. Each observation records the hip and knee joint angles across 20 equally spaced points of a movement cycle.
Usage
data(angle_walk_array)
Format
A 3-dimensional numeric array with 1,560 values and dimensions:
- [1:20]
Movement cycle points
- [1:39]
Individual subjects (boys)
- [1:2]
Joint angle type:
"Hip Angle"
,"Knee Angle"
Details
The dataset name has been kept as angle_walk_array to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix _array indicates that the dataset is an array. The original content has not been modified in any way.
Source
Data taken from the fda package version 6.3.0.
Body Temperature and Heart Rate
Description
This dataset, body_metrics_df, is a data frame containing measurements of body temperature and heart rate for 130 healthy individuals. It was used to investigate the claim that "normal" human body temperature is 98.6 degrees Fahrenheit.
Usage
data(body_metrics_df)
Format
A data frame with 130 observations and 3 variables:
- temperature
Numeric vector indicating the body temperature of each individual (degrees Fahrenheit)
- gender
Integer code indicating the gender of the individual
- hr
Integer vector indicating the heart rate (beats per minute)
Details
The dataset name has been kept as 'body_metrics_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.
Source
Data taken from the UsingR package version 2.0-7.
Infant Walking
Description
This dataset, infant_walking_df, is a data frame containing the ages (in months) at which 12 infants were reported by their mothers to have started walking. The infants were randomly assigned to either an "exercise" or "no-exercise" group as part of the study conducted by Zelazo et al. (1972). The data are also presented in Table 9.8 of Wolfe and Schneider, *Intuitive Introductory Statistics*.
Usage
data(infant_walking_df)
Format
A data frame with 6 observations and 2 variables:
- exercise
Numeric vector indicating the age at which infants in the exercise group began walking (months)
- no_exercise
Numeric vector indicating the age at which infants in the no-exercise group began walking (months)
Details
The dataset name has been kept as 'infant_walking_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.
Source
Data taken from the IIS package version 1.1.
Peak Knee Velocity in Walking
Description
This dataset, knee_speed_tbl_df, is a tibble containing measurements of peak knee velocity during walking at both flexion and extension. The data originate from studies investigating functional performance in individuals with cerebral palsy.
Usage
data(knee_speed_tbl_df)
Format
A tibble with 2 variables:
- flexion
Numeric values indicating peak knee velocity at flexion
- extension
Numeric values indicating peak knee velocity at extension
Details
The dataset name has been kept as 'knee_speed_tbl_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'tbl_df' indicates that the dataset is stored as a tibble (a modern data frame). The original content has not been modified in any way.
Source
Data taken from the pubh package version 2.0.0.
Meniscal Repairs Load at Failure
Description
This dataset, meniscal_list, contains the load at failure for 18 cadaveric menisci repaired by one of three techniques: the FasT-Fix Meniscal Repair Suture System (FasT-Fix), the use of biodegradable Meniscus Arrows (MA), and the Vertical Mattress Sutures (VMS) approach. The data are also presented in Table 12.1 of Wolfe and Schneider - Intuitive Introductory Statistics.
Usage
data(meniscal_list)
Format
A list with 3 numeric components, each containing 6 observations:
- FasT-Fix
Numeric vector. Load at failure values for menisci repaired with the FasT-Fix system.
- Meniscus Arrows
Numeric vector. Load at failure values for menisci repaired with biodegradable Meniscus Arrows.
- Vertical Mattress
Numeric vector. Load at failure values for menisci repaired with Vertical Mattress Sutures.
Details
The dataset name has been kept as 'meniscal_list' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'list' indicates that the dataset is stored as a list structure. The original content has not been modified in any way.
Source
Data taken from the IIS package, version 1.1.
Motion Sense Dataset
Description
This dataset, motion_sense_list, is a list containing smartphone sensor measurements of user acceleration and pitch attitude collected from 24 individuals performing various physical activities. The dataset includes time-series data recorded by accelerometer and gyroscope sensors under consistent environmental conditions.
Usage
data(motion_sense_list)
Format
A list of length 2:
- user_acceleration
Numeric matrix of dimensions 200 × 96 containing acceleration measurements for each participant across activities
- pitch_attitude
Numeric matrix of dimensions 200 × 96 containing pitch angle measurements for each participant across activities
Details
Participants (n = 24) of varying gender, age, weight, and height performed four distinct activities: jogging, walking, sitting, and standing. Additional recordings also included stair movements (upstairs and downstairs).
The dataset name has been kept as 'motion_sense_list' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'list' indicates that the dataset is stored as a list object. The original content has not been modified in any way.
Source
Data taken from the ReMFPCA package version 2.0.0.
Simulated Motion Paths
Description
This dataset, motionpaths_list, is a list containing simulated motion paths. It includes trajectories represented as numeric matrices and corresponding group classifications.
Usage
data(motionpaths_list)
Format
A list with 2 components:
- trajectories
A numeric matrix with dimensions [40, 10], representing simulated motion trajectories
- groups
A factor vector with 4 levels indicating group classifications
Details
The dataset name has been kept as 'motionpaths_list' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'list' indicates that the dataset is a list object. The original content has not been modified in any way.
Source
Data taken from the RRPP package version 2.1.2.
Data of 2,585 Participants in the Osteoarthritis Initiative (OAI) Project
Description
This dataset, osteoarthritis_df, is a data frame containing demographic and clinical information of 2,585 individuals with or at risk of knee osteoarthritis. The dataset includes variables such as age, sex, body mass index (BMI), race, smoking status, and osteoarthritis-related outcomes. Some variables contain missing values, including BMI (quantitative), race (categorical), smoking status (binary), and knee osteoarthritis status at follow-up (binary).
Usage
data(osteoarthritis_df)
Format
A data frame with 2,585 observations and 7 variables:
- AGE
Integer vector indicating the participant's age
- SEX
Factor indicating the participant's sex (2 levels)
- BMI
Numeric vector indicating the body mass index of the participant
- RAC
Factor indicating the participant's race (4 levels)
- SMK
Factor indicating the smoking status (2 levels)
- OSP
Factor indicating osteoarthritis status at baseline (2 levels)
- KOA
Factor indicating knee osteoarthritis status at follow-up (2 levels)
Details
The dataset name has been kept as 'osteoarthritis_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.
Source
Data taken from the MatchThem package version 1.2.1.
Data from Patients with Acute Rheumatoid Arthritis
Description
This dataset, rheuma_df, is a data frame containing data from patients with acute rheumatoid arthritis. A new agent was compared with an active control, and each patient was evaluated on a five-point assessment scale of improvement.
Usage
data(rheuma_df)
Format
A data frame with 10 observations and 3 variables:
- Drug
Factor indicating the treatment group (2 levels: new agent or active control)
- Improvement
Ordered factor indicating improvement on a five-point assessment scale
- n
Integer indicating the number of patients in each category
Details
The dataset name has been kept as 'rheuma_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.
Source
Data taken from the Fahrmeir package version 2016.5.31.
Running Injury Clinic Kinematic Dataset
Description
This dataset, run_biomech_tbl_df, is a tibble containing biomechanics data of human
subjects (N = 1,832
) running on a treadmill. Data include 3D marker positions
over trials ranging from 25 to 60 seconds. In addition, demographic information and
calculated variables of interest (such as step width, stride rate, peak knee flexion angle)
are provided. The dataset also comes with sample processing code and data analysis tutorials.
Usage
data(run_biomech_tbl_df)
Format
A tibble with 1,832 observations and 26 variables:
- sub_id
Numeric identifier for the subject.
- datestring
Character string indicating the recording date.
- filename
Character string specifying the source filename.
- speed_r
Numeric value for treadmill running speed.
- age
Numeric value for subject's age.
- Height
Numeric value for subject's height (in cm).
- Weight
Numeric value for subject's weight (in kg).
- Gender
Character string indicating subject's gender.
- DominantLeg
Character string indicating the dominant leg.
- InjDefn
Character string indicating the injury definition.
- InjJoint
Character string indicating the injured joint.
- InjSide
Character string indicating the injured side.
- SpecInjury
Character string specifying the injury type.
- InjDuration
Numeric value for injury duration (in weeks).
- InjJoint2
Character string for additional injured joint information.
- InjSide2
Character string for additional injured side information.
- SpecInjury2
Character string for additional specific injury information.
- Activities
Character string indicating physical activities.
- Level
Character string indicating running level.
- YrsRunning
Numeric value for years of running experience.
- RaceDistance
Character string indicating typical race distance.
- RaceTimeHrs
Character string for race completion time (hours).
- RaceTimeMins
Character string for race completion time (minutes).
- RaceTimeSecs
Character string for race completion time (seconds).
- YrPR
Numeric value for year of personal record.
- NumRaces
Numeric value indicating number of races completed.
Details
The dataset name has been kept as 'run_biomech_tbl_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'tbl_df' indicates that the dataset is stored as a tibble (data frame). The original content has not been modified in any way.
Source
Data taken from figshare: https://plus.figshare.com/articles/dataset/Running_Injury_Clinic_Kinematic_Dataset/24255795/1?file=42637039
Simulated Surgery Procedures Data
Description
This dataset, surgerydat_df, is a data frame containing simulated data of surgery procedures performed at multiple hospitals. It includes information on patients, their survival times, and hospital-specific risk characteristics.
Usage
data(surgerydat_df)
Format
A data frame with 32,529 observations and 9 variables:
- entrytime
Numeric vector indicating the patient’s entry time into the study (in days)
- survtime
Numeric vector indicating survival time (in days)
- censorid
Numeric indicator of censoring status
- unit
Numeric vector identifying the hospital unit (1–45)
- exptheta
Numeric vector indicating the true failure rate of the hospital
- psival
Numeric vector indicating the hospital’s patient arrival rate (
\psi
)- age
Numeric vector indicating the patient’s age (in years)
- sex
Factor with 2 levels indicating patient sex
- BMI
Numeric vector indicating the patient’s body mass index
Details
The dataset comprises data from 45 simulated hospitals with patient arrivals
occurring within the first 400 days after the start of the study. Patient survival
times were determined using a risk-adjusted Cox proportional hazards model with
coefficients: age = 0.003, BMI = 0.02, and sexmale = 0.2, along with an exponential
baseline hazard rate h_0(t, \lambda = 0.01) e^\mu
. Hospital-specific hazard rate
increases were sampled from a normal distribution:
\theta \sim N(\log(1), sd = 0.4)
This means that the average failure rate of hospitals in the dataset is the baseline
(\theta = 0
), with some hospitals experiencing higher or lower rates. The true
failure rate is given in the variable exptheta
. Patient arrival rates
(\psi
) differ across hospitals:
Hospitals 1–5 & 16–20: 0.5 patients per day (small hospitals)
Hospitals 6–10 & 21–25: 1 patient per day (medium hospitals)
Hospitals 11–15 & 26–30: 1.5 patients per day (large hospitals)
The dataset name has been kept as 'surgerydat_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.
Source
Data taken from the success package version 1.1.1.
Vital Signs Dataset - Pediatrics
Description
This dataset, vs_peds_tbl_df, is a tibble data frame containing an updated SDTM VS dataset with anthropometric measurements for pediatric patients. It includes study identifiers, subject identifiers, vital signs test codes, test names, measurement results, visit information, evaluator details, and epoch classification. The dataset follows the CDISC SDTM structure and is tailored for pediatric populations.
Usage
data(vs_peds_tbl_df)
Format
A data frame with 164 observations and 26 variables:
- STUDYID
Character string indicating the study identifier
- DOMAIN
Character string indicating the domain abbreviation
- USUBJID
Character string indicating the unique subject identifier
- VSSEQ
Integer value indicating the sequence number
- VSTESTCD
Character string indicating the vital signs test short name
- VSTEST
Character string indicating the vital signs test name
- VSPOS
Character string indicating the subject’s position during measurement
- VSORRES
Character string indicating the result or finding in original units
- VSORRESU
Character string indicating the original measurement units
- VSSTRESC
Character string indicating the character result/finding in standard format
- VSSTRESN
Numeric value indicating the result/finding in standard units
- VSSTRESU
Character string indicating the standard units
- VSSTAT
Character string indicating the completion status
- VSLOC
Character string indicating the location of the measurement
- VSBLFL
Character string indicating whether the value is a baseline flag
- VISITNUM
Numeric value indicating the visit number
- VISIT
Character string indicating the visit name
- VISITDY
Integer value indicating the planned study day of the visit
- VSDTC
Character string indicating the date/time of measurements
- VSDY
Integer value indicating the study day of vital signs
- VSTPT
Character string indicating the planned time point name
- VSTPTNUM
Numeric value indicating the planned time point number
- VSELTM
Character string indicating the planned elapsed time from the time point reference
- VSTPTREF
Character string indicating the time point reference
- VSEVAL
Character string indicating the evaluator
- EPOCH
Character string indicating the epoch classification
Details
The dataset name has been kept as 'vs_peds_tbl_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.
Source
Data taken from the pharmaversesdtm package version 1.3.1.
Running Injury Clinic Kinematic Dataset (Walking)
Description
This dataset, walk_biomech_tbl_df, is a tibble containing biomechanics data of human
subjects (N = 2,088
) walking on a treadmill. Data include 3D marker positions
over trials ranging from 25 to 60 seconds. In addition, demographic information and
calculated variables of interest (such as step width, stride rate, peak knee flexion angle)
are provided. The dataset also comes with sample processing code and data analysis tutorials.
Usage
data(walk_biomech_tbl_df)
Format
A tibble with 2,088 observations and 26 variables:
- sub_id
Numeric identifier for the subject.
- datestring
Datetime object indicating the recording date.
- filename
Character string specifying the source filename.
- speed_w
Numeric value for treadmill walking speed.
- age
Numeric value for subject's age.
- Height
Numeric value for subject's height (in cm).
- Weight
Numeric value for subject's weight (in kg).
- Gender
Character string indicating subject's gender.
- DominantLeg
Character string indicating the dominant leg.
- InjDefn
Character string indicating the injury definition.
- InjJoint
Character string indicating the injured joint.
- InjSide
Character string indicating the injured side.
- SpecInjury
Character string specifying the injury type.
- InjDuration
Numeric value for injury duration (in weeks).
- InjJoint2
Character string for additional injured joint information.
- InjSide2
Character string for additional injured side information.
- SpecInjury2
Character string for additional specific injury information.
- Activities
Character string indicating physical activities.
- Level
Character string indicating running level.
- YrsRunning
Numeric value for years of running experience.
- RaceDistance
Character string indicating typical race distance.
- RaceTimeHrs
Character string for race completion time (hours).
- RaceTimeMins
Character string for race completion time (minutes).
- RaceTimeSecs
Character string for race completion time (seconds).
- YrPR
Numeric value for year of personal record.
- NumRaces
Numeric value indicating number of races completed.
Details
The dataset name has been kept as 'walk_biomech_tbl_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'tbl_df' indicates that the dataset is stored as a tibble (data frame). The original content has not been modified in any way.
Source
Data taken from figshare: https://plus.figshare.com/articles/dataset/Running_Injury_Clinic_Kinematic_Dataset/24255795/1?file=42637045
Walking Data
Description
This dataset, walking_df, is a data frame containing demographic and categorical information from walking activity observations. It includes sex, age, ordered factors related to the walking activity, and the source of the data.
This dataset, walking_df, is a data frame containing measurements of walking disability collected in studies A, B, and E. It follows a clinical trial data structure and includes identifiers, visit information, test codes, test names, measurement results, and related metadata.
Usage
data(walking_df)
data(walking_df)
Format
A data frame with 890 observations and 5 variables:
- sex
Factor indicating the sex of the participant (2 levels)
- age
Numeric value indicating the age of the participant
- YA
Ordered factor with 4 levels related to walking activity A
- YB
Ordered factor with 4 levels related to walking activity B
- src
Factor indicating the source of the data (3 levels)
A data frame with 29,643 observations and 24 variables:
- STUDYID
Character string indicating the study identifier
- DOMAIN
Character string indicating the domain abbreviation
- USUBJID
Character string indicating the unique subject identifier
- VSSEQ
Numeric value indicating the sequence number
- VSTESTCD
Character string indicating the vital signs test short name
- VSTEST
Character string indicating the vital signs test name
- VSPOS
Character string indicating the subject’s position during measurement
- VSORRES
Character string indicating the result or finding in original units
- VSORRESU
Character string indicating the original measurement units
- VSSTRESC
Character string indicating the character result/finding in standard format
- VSSTRESN
Numeric value indicating the result/finding in standard units
- VSSTRESU
Character string indicating the standard units
- VSSTAT
Character string indicating the completion status
- VSLOC
Character string indicating the location of the measurement
- VSBLFL
Character string indicating whether the value is a baseline flag
- VISITNUM
Numeric value indicating the visit number
- VISIT
Character string indicating the visit name
- VISITDY
Numeric value indicating the planned study day of the visit
- VSDTC
Character string indicating the date/time of measurements
- VSDY
Numeric value indicating the study day of vital signs
- VSTPT
Character string indicating the planned time point name
- VSTPTNUM
Numeric value indicating the planned time point number
- VSELTM
Character string indicating the planned elapsed time from the time point reference
- VSTPTREF
Character string indicating the time point reference
Details
The dataset name has been kept as 'walking_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.
The dataset name has been kept as 'walking_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.
Source
Data taken from the TrendLSW package version 1.0.2.
Data taken from the mice package version 3.18.0.
Activity Labels for Human Activity Monitoring
Description
This dataset, z_labels_monitoring_df, is a data frame containing the labelled activities recorded during the observation period corresponding to the data object z.acc.
Usage
data(z_labels_monitoring_df)
Format
A data frame with 6 observations and 3 variables:
- activity
Character string indicating the recorded activity
- start
Integer value indicating the start time of the activity
- end
Integer value indicating the end time of the activity
Details
The dataset name has been kept as 'z_labels_monitoring_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the healthmotionR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.
Source
Data taken from the TrendLSW package version 1.0.2.