A spatially-aware cell clustering algorithm is provided with cluster significance assessment. It comprises four key modules: spatially-aware cell-gene co-embedding, cell clustering, signature gene identification, and cluster significant assessment. More details can be referred to Peng Xie, et al. (2025) <doi:10.1016/j.cell.2025.05.035>.
| Version: |
0.1.0 |
| Depends: |
R (≥ 4.0.0) |
| Imports: |
Rcpp (≥ 1.0.10), furrr, future, ggplot2, irlba, DR.SC, PRECAST, ProFAST, Matrix, ade4, progress, pbapply, dplyr, Seurat, stats, utils |
| LinkingTo: |
Rcpp, RcppArmadillo |
| Suggests: |
knitr, rmarkdown, scater, ggrepel, RANN, grDevices |
| Published: |
2025-11-17 |
| DOI: |
10.32614/CRAN.package.coFAST (may not be active yet) |
| Author: |
Wei Liu [aut, cre],
Xiao Zhang [aut],
Yi Yang [aut],
Peng Xie [aut],
Chengqi Lin [aut],
Jin Liu [aut] |
| Maintainer: |
Wei Liu <liuweideng at gmail.com> |
| BugReports: |
https://github.com/feiyoung/coFAST/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/feiyoung/coFAST |
| NeedsCompilation: |
yes |
| Materials: |
README |
| CRAN checks: |
coFAST results |