AMISforInfectiousDiseases: Implement the AMIS Algorithm for Infectious Disease Models
Implements the Adaptive Multiple Importance Sampling (AMIS) algorithm, as described by Retkute et al. (2021, <doi:10.1214/21-AOAS1486>), to estimate key epidemiological parameters by combining outputs from a geostatistical model of infectious diseases (such as prevalence, incidence, or relative risk) with a disease transmission model. Utilising the resulting posterior distributions, the package enables forward projections at the local level.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.1) |
| Imports: | Hmisc, mclust, mnormt, Rcpp, weights |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | knitr, ggplot2, patchwork, rmarkdown, sf, viridis |
| Published: | 2025-01-20 |
| DOI: | 10.32614/CRAN.package.AMISforInfectiousDiseases |
| Author: | Evandro Konzen 
[aut],
Renata Retkute
[aut],
Raiha Browning
[aut],
Thilbault Lestang [aut],
Simon Spencer
[aut, cre],
University of Warwick [cph],
Oxford Research Software Engineering [cph] |
| Maintainer: | Simon Spencer <s.e.f.spencer at warwick.ac.uk> |
| BugReports: | https://github.com/drsimonspencer/AMISforInfectiousDiseases-dev/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/drsimonspencer/AMISforInfectiousDiseases-dev |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | AMISforInfectiousDiseases results |
Documentation:
| Reference manual: | AMISforInfectiousDiseases.html , AMISforInfectiousDiseases.pdf |
| Vignettes: |
Fitting Ascariasis data (source) Simulation study (source) |
Downloads:
| Package source: | AMISforInfectiousDiseases_0.1.0.tar.gz |
| Windows binaries: | r-devel: AMISforInfectiousDiseases_0.1.0.zip, r-release: AMISforInfectiousDiseases_0.1.0.zip, r-oldrel: AMISforInfectiousDiseases_0.1.0.zip |
| macOS binaries: | r-release (arm64): AMISforInfectiousDiseases_0.1.0.tgz, r-oldrel (arm64): AMISforInfectiousDiseases_0.1.0.tgz, r-release (x86_64): AMISforInfectiousDiseases_0.1.0.tgz, r-oldrel (x86_64): AMISforInfectiousDiseases_0.1.0.tgz |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=AMISforInfectiousDiseases to link to this page.