Last updated on 2024-05-09 10:50:34 CEST.
Package | ERROR | NOTE | OK |
---|---|---|---|
CohortCharacteristics | 9 | 4 | |
DrugUtilisation | 9 | 4 | |
omopgenerics | 13 | ||
PatientProfiles | 13 |
Current CRAN status: NOTE: 9, OK: 4
Version: 0.2.0
Check: installed package size
Result: NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
doc 5.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.2.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘lifecycle’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: ERROR: 9, OK: 4
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [448s/300s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(DrugUtilisation)
>
> test_check("DrugUtilisation")
Starting 2 test processes
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-benchmarkDUS.R:2:3', 'test-dailyDose.R:2:3',
'test-generateDrugUtilisationCohortSet.R:48:3',
'test-generateDrugUtilisationCohortSet.R:147:3',
'test-generateDrugUtilisationCohortSet.R:203:3',
'test-generateDrugUtilisationCohortSet.R:253:3',
'test-generateDrugUtilisationCohortSet.R:349:3', 'test-drugUse.R:2:3',
'test-drugUse.R:40:3', 'test-drugUse.R:254:3', 'test-drugUse.R:455:3',
'test-drugUse.R:597:3', 'test-drugUse.R:847:3', 'test-drugUse.R:868:3',
'test-drugUse.R:914:3', 'test-indication.R:3:3', 'test-indication.R:185:3',
'test-indication.R:339:3', 'test-indication.R:464:3'
• empty test (1): 'test-generateConceptCohortSet.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-indication.R:648:3'): summariseIndication ────────────────────
grepl("summarised_indication", unique(result$result_type)) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test-largeScaleCharacteristics.R:8:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(cdm[["cohort1"]], conceptSet = conceptSet)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Failure ('test-largeScaleCharacteristics.R:14:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(...)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [320s/277s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(DrugUtilisation)
>
> test_check("DrugUtilisation")
Starting 2 test processes
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-benchmarkDUS.R:2:3', 'test-dailyDose.R:2:3',
'test-generateDrugUtilisationCohortSet.R:48:3',
'test-generateDrugUtilisationCohortSet.R:147:3',
'test-generateDrugUtilisationCohortSet.R:203:3',
'test-generateDrugUtilisationCohortSet.R:253:3',
'test-generateDrugUtilisationCohortSet.R:349:3', 'test-drugUse.R:2:3',
'test-drugUse.R:40:3', 'test-drugUse.R:254:3', 'test-drugUse.R:455:3',
'test-drugUse.R:597:3', 'test-drugUse.R:847:3', 'test-drugUse.R:868:3',
'test-drugUse.R:914:3', 'test-indication.R:3:3', 'test-indication.R:185:3',
'test-indication.R:339:3', 'test-indication.R:464:3'
• empty test (1): 'test-generateConceptCohortSet.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-indication.R:648:3'): summariseIndication ────────────────────
grepl("summarised_indication", unique(result$result_type)) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test-largeScaleCharacteristics.R:8:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(cdm[["cohort1"]], conceptSet = conceptSet)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Failure ('test-largeScaleCharacteristics.R:14:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(...)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [515s/281s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(DrugUtilisation)
>
> test_check("DrugUtilisation")
Starting 2 test processes
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-benchmarkDUS.R:2:3', 'test-dailyDose.R:2:3',
'test-generateDrugUtilisationCohortSet.R:48:3',
'test-generateDrugUtilisationCohortSet.R:147:3',
'test-generateDrugUtilisationCohortSet.R:203:3',
'test-generateDrugUtilisationCohortSet.R:253:3',
'test-generateDrugUtilisationCohortSet.R:349:3', 'test-drugUse.R:2:3',
'test-drugUse.R:40:3', 'test-drugUse.R:254:3', 'test-drugUse.R:455:3',
'test-drugUse.R:597:3', 'test-drugUse.R:847:3', 'test-drugUse.R:868:3',
'test-drugUse.R:914:3', 'test-indication.R:3:3', 'test-indication.R:185:3',
'test-indication.R:339:3', 'test-indication.R:464:3'
• empty test (1): 'test-generateConceptCohortSet.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-indication.R:648:3'): summariseIndication ────────────────────
grepl("summarised_indication", unique(result$result_type)) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test-largeScaleCharacteristics.R:8:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(cdm[["cohort1"]], conceptSet = conceptSet)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Failure ('test-largeScaleCharacteristics.R:14:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(...)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [518s/286s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(DrugUtilisation)
>
> test_check("DrugUtilisation")
Starting 2 test processes
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-benchmarkDUS.R:2:3', 'test-dailyDose.R:2:3',
'test-generateDrugUtilisationCohortSet.R:48:3',
'test-generateDrugUtilisationCohortSet.R:147:3',
'test-generateDrugUtilisationCohortSet.R:203:3',
'test-generateDrugUtilisationCohortSet.R:253:3',
'test-generateDrugUtilisationCohortSet.R:349:3', 'test-drugUse.R:2:3',
'test-drugUse.R:40:3', 'test-drugUse.R:254:3', 'test-drugUse.R:455:3',
'test-drugUse.R:597:3', 'test-drugUse.R:847:3', 'test-drugUse.R:868:3',
'test-drugUse.R:914:3', 'test-indication.R:3:3', 'test-indication.R:185:3',
'test-indication.R:339:3', 'test-indication.R:464:3'
• empty test (1): 'test-generateConceptCohortSet.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-indication.R:648:3'): summariseIndication ────────────────────
grepl("summarised_indication", unique(result$result_type)) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test-largeScaleCharacteristics.R:8:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(cdm[["cohort1"]], conceptSet = conceptSet)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Failure ('test-largeScaleCharacteristics.R:14:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(...)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.5.3
Check: tests
Result: ERROR
Running 'testthat.R' [139s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(DrugUtilisation)
>
> test_check("DrugUtilisation")
Starting 2 test processes
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-benchmarkDUS.R:2:3', 'test-dailyDose.R:2:3',
'test-generateDrugUtilisationCohortSet.R:48:3',
'test-generateDrugUtilisationCohortSet.R:147:3',
'test-generateDrugUtilisationCohortSet.R:203:3',
'test-generateDrugUtilisationCohortSet.R:253:3',
'test-generateDrugUtilisationCohortSet.R:349:3', 'test-drugUse.R:2:3',
'test-drugUse.R:40:3', 'test-drugUse.R:254:3', 'test-drugUse.R:455:3',
'test-drugUse.R:597:3', 'test-drugUse.R:847:3', 'test-drugUse.R:868:3',
'test-drugUse.R:914:3', 'test-indication.R:3:3', 'test-indication.R:185:3',
'test-indication.R:339:3', 'test-indication.R:464:3'
• empty test (1): 'test-generateConceptCohortSet.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-indication.R:648:3'): summariseIndication ────────────────────
grepl("summarised_indication", unique(result$result_type)) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test-largeScaleCharacteristics.R:8:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(cdm[["cohort1"]], conceptSet = conceptSet)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Failure ('test-largeScaleCharacteristics.R:14:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(...)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
Error: Test failures
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [421s/257s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(DrugUtilisation)
>
> test_check("DrugUtilisation")
Starting 2 test processes
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-benchmarkDUS.R:2:3', 'test-dailyDose.R:2:3',
'test-generateDrugUtilisationCohortSet.R:48:3',
'test-generateDrugUtilisationCohortSet.R:147:3',
'test-generateDrugUtilisationCohortSet.R:203:3',
'test-generateDrugUtilisationCohortSet.R:253:3',
'test-generateDrugUtilisationCohortSet.R:349:3', 'test-drugUse.R:2:3',
'test-drugUse.R:40:3', 'test-drugUse.R:254:3', 'test-drugUse.R:455:3',
'test-drugUse.R:597:3', 'test-drugUse.R:847:3', 'test-drugUse.R:868:3',
'test-drugUse.R:914:3', 'test-indication.R:3:3', 'test-indication.R:185:3',
'test-indication.R:339:3', 'test-indication.R:464:3'
• empty test (1): 'test-generateConceptCohortSet.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-indication.R:648:3'): summariseIndication ────────────────────
grepl("summarised_indication", unique(result$result_type)) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test-largeScaleCharacteristics.R:8:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(cdm[["cohort1"]], conceptSet = conceptSet)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Failure ('test-largeScaleCharacteristics.R:14:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(...)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [430s/292s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(DrugUtilisation)
>
> test_check("DrugUtilisation")
Starting 2 test processes
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-benchmarkDUS.R:2:3', 'test-dailyDose.R:2:3',
'test-generateDrugUtilisationCohortSet.R:48:3',
'test-generateDrugUtilisationCohortSet.R:147:3',
'test-generateDrugUtilisationCohortSet.R:203:3',
'test-generateDrugUtilisationCohortSet.R:253:3',
'test-generateDrugUtilisationCohortSet.R:349:3', 'test-drugUse.R:2:3',
'test-drugUse.R:40:3', 'test-drugUse.R:254:3', 'test-drugUse.R:455:3',
'test-drugUse.R:597:3', 'test-drugUse.R:847:3', 'test-drugUse.R:868:3',
'test-drugUse.R:914:3', 'test-indication.R:3:3', 'test-indication.R:185:3',
'test-indication.R:339:3', 'test-indication.R:464:3'
• empty test (1): 'test-generateConceptCohortSet.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-indication.R:648:3'): summariseIndication ────────────────────
grepl("summarised_indication", unique(result$result_type)) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test-largeScaleCharacteristics.R:8:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(cdm[["cohort1"]], conceptSet = conceptSet)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Failure ('test-largeScaleCharacteristics.R:14:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(...)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.5.3
Check: tests
Result: ERROR
Running 'testthat.R' [213s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(DrugUtilisation)
>
> test_check("DrugUtilisation")
Starting 2 test processes
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-benchmarkDUS.R:2:3', 'test-dailyDose.R:2:3',
'test-generateDrugUtilisationCohortSet.R:48:3',
'test-generateDrugUtilisationCohortSet.R:147:3',
'test-generateDrugUtilisationCohortSet.R:203:3',
'test-generateDrugUtilisationCohortSet.R:253:3',
'test-generateDrugUtilisationCohortSet.R:349:3', 'test-drugUse.R:2:3',
'test-drugUse.R:40:3', 'test-drugUse.R:254:3', 'test-drugUse.R:455:3',
'test-drugUse.R:597:3', 'test-drugUse.R:847:3', 'test-drugUse.R:868:3',
'test-drugUse.R:914:3', 'test-indication.R:3:3', 'test-indication.R:185:3',
'test-indication.R:339:3', 'test-indication.R:464:3'
• empty test (1): 'test-generateConceptCohortSet.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-indication.R:648:3'): summariseIndication ────────────────────
grepl("summarised_indication", unique(result$result_type)) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test-largeScaleCharacteristics.R:8:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(cdm[["cohort1"]], conceptSet = conceptSet)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Failure ('test-largeScaleCharacteristics.R:14:3'): basic functionality summariseCodelist ──
Expected `summariseCharacteristicsFromCodelist(...)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
[ FAIL 3 | WARN 71 | SKIP 20 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13