Last updated on 2025-10-24 09:50:08 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 12.24 | 241.36 | 253.60 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.30 | 253.08 | 263.38 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 46.00 | 272.39 | 318.39 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 32.00 | 320.87 | 352.87 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 20.00 | 187.00 | 207.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 15.00 | 274.06 | 289.06 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 15.69 | 272.97 | 288.66 | OK | |
| r-release-macos-arm64 | 1.1.4 | 6.00 | 96.00 | 102.00 | OK | |
| r-release-macos-x86_64 | 1.1.4 | 22.00 | 319.00 | 341.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 21.00 | 189.00 | 210.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | 6.00 | 92.00 | 98.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.4 | 21.00 | 297.00 | 318.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 24.00 | 239.00 | 263.00 | OK |
Version: 1.1.4
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
mapi.html:317:1 (mapi.Rd:174): Warning: missing </ul> before </div>
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [92s/244s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.805, system: 0.153, elapsed: 5.532 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.490, system: 0.553, elapsed: 23.037 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.035, elapsed: 0.667 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.112, system: 0.502, elapsed: 10.991 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.010, elapsed: 0.417 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.470, system: 1.733, elapsed: 43.605 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.763, system: 0.125, elapsed: 3.725 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.446, system: 0.424, elapsed: 27.582 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.044, elapsed: 0.742 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.235, system: 0.500, elapsed: 12.807 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.020, elapsed: 0.608 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.493, system: 1.540, elapsed: 48.432 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.799, system: 0.142, elapsed: 4.710 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.471, system: 0.545, elapsed: 23.329 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.043, elapsed: 0.569 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.163, system: 0.534, elapsed: 7.966 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.023, elapsed: 0.466 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.339, system: 0.360, elapsed: 3.054 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.905, system: 2.133, elapsed: 43.064 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.793, system: 0.181, elapsed: 9.757 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.392, system: 0.362, elapsed: 36.612 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.035, elapsed: 0.600 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.121, system: 0.376, elapsed: 12.426 seconds]
Computing values for grid cells...
... done. [user: 0.190, system: 0.010, elapsed: 0.460 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.911, system: 0.997, elapsed: 29.491 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.386, system: 2.314, elapsed: 93.170 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [88s/200s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.458, system: 0.075, elapsed: 1.797 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.218, system: 0.398, elapsed: 14.878 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.038, elapsed: 0.613 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.758, system: 0.357, elapsed: 6.322 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.014, elapsed: 0.242 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.423, system: 1.151, elapsed: 25.494 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.722, system: 0.097, elapsed: 4.669 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.338, system: 0.413, elapsed: 25.353 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.033, elapsed: 0.569 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.948, system: 0.378, elapsed: 10.514 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.016, elapsed: 0.480 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.040, system: 1.250, elapsed: 43.855 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.749, system: 0.106, elapsed: 4.749 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.341, system: 0.349, elapsed: 23.223 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.041, elapsed: 0.827 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.870, system: 0.363, elapsed: 8.962 seconds]
Computing values for grid cells...
... done. [user: 0.192, system: 0.033, elapsed: 0.468 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.116, system: 0.353, elapsed: 1.594 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.210, system: 1.593, elapsed: 42.041 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.548, system: 0.090, elapsed: 3.193 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.205, system: 0.321, elapsed: 21.278 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.030, elapsed: 0.674 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.009, system: 0.451, elapsed: 15.648 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.016, elapsed: 0.593 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.746, system: 1.142, elapsed: 32.524 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.659, system: 2.524, elapsed: 77.578 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64