CRAN Package Check Results for Maintainer ‘Isaac Vock <isaac.vock at gmail.com>’

Last updated on 2025-10-31 09:50:48 CET.

Package	ERROR	NOTE	OK
bakR	1	5	7

Package bakR

Current CRAN status: ERROR: 1, NOTE: 5, OK: 7

Version: 1.0.1
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘RcppParallel’ ‘rstantools’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Differential-Synth.Rmd’ using rmarkdown Quitting from Differential-Synth.Rmd:28-42 [setup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'DESeq2' --- Backtrace: ▆ 1. └─base::library(DESeq2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Differential-Synth.Rmd' failed with diagnostics: there is no package called 'DESeq2' --- failed re-building ‘Differential-Synth.Rmd’ --- re-building ‘Dropout.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Dropout.Rmd’ --- re-building ‘Getting-Started.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Getting-Started.Rmd’ --- re-building ‘NSS.Rmd’ using rmarkdown Quitting from NSS.Rmd:31-46 [setup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'DESeq2' --- Backtrace: ▆ 1. └─base::library(DESeq2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'NSS.Rmd' failed with diagnostics: there is no package called 'DESeq2' --- failed re-building ‘NSS.Rmd’ --- re-building ‘Troubleshooting.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Troubleshooting.Rmd’ --- re-building ‘bakR-Fn.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘bakR-Fn.Rmd’ --- re-building ‘bakR-Quickstart.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘bakR-Quickstart.Rmd’ SUMMARY: processing the following files failed: ‘Differential-Synth.Rmd’ ‘NSS.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64

Version: 1.0.1
Check: installed package size
Result: NOTE installed size is 103.3Mb sub-directories of 1Mb or more: libs 101.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.1
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64