| analyseNetwork | General properties of the network | 
| beatAML | beatAML | 
| drugComb | drugComb | 
| extractSubMatrix | Extract the non-missing submatrices from a given matrix. | 
| findCluster | Find clusters in projected unipartite networks | 
| herbIngredient | herbIngredient | 
| NIMAA | NIMAA: A package for Nominal Data Mining Analysis. | 
| nominalAsBinet | Convert nominal data to a bipartite network | 
| plotBipartite | Plot the bipartite network and the corresponding projected networks | 
| plotBipartiteInteractive | Use the incidence matrix to plot an interactive bipartite network | 
| plotCluster | Plot the clusters in one projection of the bipartite network | 
| plotIncMatrix | Plot the incidence matrix. | 
| predictEdge | Edge prediction of weighted bipartite network. | 
| robertson | robertson | 
| scoreCluster | Score the cluster analysis in a projected network based on additional internal measures. | 
| validateCluster | Validate the cluster analysis in a projected network based on additional external measures. | 
| validateEdgePrediction | Validate and compare edge prediction methods. | 
| visualClusterInBipartite | Plot the bipartite graph with color coding for different clusters in both parts |