| biconnectedComponents | Biconnected Components | 
| deleteTips | Remove tips from a phylogenetic Network | 
| getNetworkLevel | Get the level of a Network | 
| incompleteSampling | Sample Tips on a Phylogenetic Network | 
| isFUstable | Determine whether a phylogeny is FU-stable | 
| isNormal | #' Determine whether a phylogeny is Normal | 
| isTreeBased | Determine whether a network is tree-based | 
| isTreeChild | Determine whether a network is tree-child | 
| ltt.network | Lineages thru time on a network | 
| make.beta.draw | Function that makes a draw from a beta distribution | 
| make.categorical.draw | Function that makes a draw from a categorical distribution | 
| make.exp.decay | Make an exponential decay function | 
| make.linear.decay | Make a linear decay function | 
| make.polynomial.decay | Make a polynomial decay function | 
| make.stepwise | Make a stepwise decay function | 
| make.trait.model | Model for trait evolution across the phylogeny | 
| make.uniform.draw | Function that makes a draw from a uniform distribution | 
| network.gsa | Sample under the Generalized Sampling Approach | 
| plottable.net | Create a more Plotting-Friendly phylogenetic Network | 
| read.net | Read a Network from Parenthetic Format | 
| reconstructedNetwork | Remove Extinct Lineages from a Phylogenetic Network | 
| sim.bdh.age | Simulate a Phylogenetic Network to a Specified Number of Taxa | 
| sim.bdh.taxa.gsa | Simulate a Phylogenetic Network to a Specified Number of Taxa | 
| sim.bdh.taxa.ssa | Simulate a Phylogenetic Network to a Specified Number of Taxa | 
| write.net | Write a Network in Parenthetic Format |