# Muscle Near-Infrared Spectroscopy Processing and Analysis

## Documentation for package ‘mnirs’ version 0.6.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

artinis_intervals.xlsx | 10 Hz Artinis Oxysoft export recorded with Oxymon MKIII
breaks_timespan | Breaks for time span data
by_label | Specify interval boundaries by time, label, lap, or sample
by_lap | Specify interval boundaries by time, label, lap, or sample
by_sample | Specify interval boundaries by time, label, lap, or sample
by_time | Specify interval boundaries by time, label, lap, or sample
create_mnirs_data | Create an _mnirs_ data frame with metadata
example_mnirs | Get path to _mnirs_ example files
extract_intervals | Extract intervals from _mnirs_ data
filter_butter | Apply a Butterworth digital filter
filter_ma | Apply a moving average filter
filter_mnirs | Filter a data frame
filter_mnirs.butterworth | Filter a data frame
filter_mnirs.moving_average | Filter a data frame
filter_mnirs.smooth_spline | Filter a data frame
filter_moving_average | Apply a moving average filter
format_hmmss | Format time span data as h:mm:ss
moxy_intervals.csv | 0.5 Hz Moxy onboard export
moxy_ramp.xlsx | 2 Hz PerfPro export of Moxy data
palette_mnirs | Custom _mnirs_ colour palette
plot.mnirs | Plot _mnirs_ objects
portamon-oxcap.xlsx | 10 Hz Artinis Oxysoft export recorded with Portamon
print.mnirs | Methods for mnirs objects
read_mnirs | Read _mnirs_ data from file
replace_invalid | Replace outliers, invalid, and missing values in _mnirs_ data
replace_missing | Replace outliers, invalid, and missing values in _mnirs_ data
replace_mnirs | Replace outliers, invalid, and missing values in _mnirs_ data
replace_outliers | Replace outliers, invalid, and missing values in _mnirs_ data
resample_mnirs | Re-sample an _mnirs_ data frame
rescale_mnirs | Re-scale data range
scale_color_mnirs | Scales for custom _mnirs_ palette
scale_colour_mnirs | Scales for custom _mnirs_ palette
scale_fill_mnirs | Scales for custom _mnirs_ palette
shift_mnirs | Shift data range
theme_mnirs | Custom _mnirs_ ggplot2 theme
train.red_intervals.csv | 10 Hz Train.Red App export