# Integration with existing packages

#### Maciej Beręsewicz

# 1 Setup

    library(blocking)
    library(data.table)
    library(reclin2)

# 2 Data

In the example we will use the same dataset as in the Blocking records for record linkage vignette.

    data(census)
    data(cis)
    setDT(census)
    setDT(cis)
    census[, x:=1:.N]
    cis[, y:=1:.N]

# 3 Integration with the `reclin2` package

The package contains function `pair_ann` which aims at integration with `reclin2` package. This function works as follows.

    pair_ann(x = census[1:1000],
             y = cis[1:1000],
             on = c("pername1", "pername2", "sex", "dob_day", "dob_mon", "dob_year", "enumcap", "enumpc"),
             deduplication = FALSE) |>
      head()

.x | .y | block
--- | --- | ---
204 | 1 | 1
204 | 176 | 1
204 | 375 | 1
204 | 391 | 1
204 | 405 | 1
204 | 424 | 1

Which provides you information on the total number of pairs. This can be further included in the pipeline of the `reclin2` package (note that we use a different ANN this time).

    pair_ann(x = census[1:1000],
             y = cis[1:1000],
             on = c("pername1", "pername2", "sex", "dob_day", "dob_mon", "dob_year", "enumcap", "enumpc"),
             deduplication = FALSE,
             ann = "hnsw") |>
      compare_pairs(on = c("pername1", "pername2", "sex", "dob_day", "dob_mon", "dob_year", "enumcap", "enumpc"),
                    comparators = list(cmp_jarowinkler())) |>
      score_simple("score",
                   on = c("pername1", "pername2", "sex", "dob_day", "dob_mon", "dob_year", "enumcap", "enumpc")) |>
      select_threshold("threshold", score = "score", threshold = 6) |>
      link(selection = "threshold") |>
      head()

.y | .x | person_id.x | pername1.x | pername2.x | sex.x | dob_day.x | dob_mon.x | dob_year.x | hse_num | enumcap.x | enumpc.x | str_nam | cap_add | census_id | x | txt.x | person_id.y | pername1.y | pername2.y | sex.y | dob_day.y | dob_mon.y | dob_year.y | enumcap.y | enumpc.y | cis_id | y | txt.y
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
11 | 945 | DE256NG039003 | HARRIET | THOMSON | F | 12 | 1 | 1995 | 39 | 39 SPRINGFIELD ROAD | DE256NG | Springfield Road | 39, Springfield Road | CENSDE256NG039003 | 945 | HARRIETTHOMSONF121199539 SPRINGFIELD ROADDE256NG | DE256NG039003 | HARRIET | THOMSON | F | 12 | 1 |  | 39 SPRINGFIELD ROAD | DE256NG | CISDE256NG039003 | 11 | HARRIETTHOMSONF12139 SPRINGFIELD ROADDE256NG
71 | 427 | DE159QA062001 | LEWIS | GREEN | M | 23 | 3 | 1973 | 62 | 62 CHURCH ROAD | DE159QA | Church Road | 62, Church Road | CENSDE159QA062001 | 427 | LEWISGREENM233197362 CHURCH ROADDE159QA | DE159QA062001 | LEWIS | GREEN | M | 23 | 3 |  | 62 CHURCH ROAD | DE159QA | CISDE159QA062001 | 71 | LEWISGREENM23362 CHURCH ROADDE159QA
83 | 720 | DE237GG025002 | IMOGEN | DARIS | F | 6 | 4 | 1968 | 25 | 25 WOODLANDS ROAD | DE237GG | Woodlands Road | 25, Woodlands Road | CENSDE237GG025002 | 720 | IMOGENDARISF64196825 WOODLANDS ROADDE237GG | DE237GG025002 | IMOGEW | DAVIS | F | 6 | 4 |  | 25 WOODLANDS ROAD | DE237GG | CISDE237GG025002 | 83 | IMOGEWDAVISF6425 WOODLANDS ROADDE237GG
99 | 136 | DE125LU022001 | DANIEC | MICCER | M | 21 | 4 | 1947 | 22 | 22 PARK LANE | DE125LU | Park Lane | 22, Park Lane | CENSDE125LU022001 | 136 | DANIECMICCERM214194722 PARK LANEDE125LU | DE125LU022001 | DAMIEL | HILLER | M | 21 | 4 |  | 22 PARK LANE | DE125LU | CISDE125LU022001 | 99 | DAMIELHILLERM21422 PARK LANEDE125LU
154 | 949 | DE256NG040002 | CHLOE | WILSON | F | 5 | 7 | 1978 | 40 | 40 SPRINGFIELD ROAD | DE256NG | Springfield Road | 40, Springfield Road | CENSDE256NG040002 | 949 | CHLOEWILSONF57197840 SPRINGFIELD ROADDE256NG | DE256NG040002 | CHLOE | WILSOM | F | 5 | 7 |  | 40 SPRINGFIELD ROAD | DE256NG | CISDE256NG040002 | 154 | CHLOEWILSOMF5740 SPRINGFIELD ROADDE256NG
156 | 549 | DE159QY035002 | AVA | KING | F | 7 | 7 | 1969 | 35 | 35 CHURCH ROAD | DE159QY | Church Road | 35, Church Road | CENSDE159QY035002 | 549 | AVAKINGF77196935 CHURCH ROADDE159QY | DE159QY035002 | AVA | KING | F | 7 | 7 |  | 35 CHURCH ROAD | DE159QY | CISDE159QY035002 | 156 | AVAKINGF7735 CHURCH ROADDE159QY

# 4 Usage with `fastLink` package

Just use the `block` column in the function `fastLink::blockData()`. As a result you will obtain a list of records blocked for further processing.

# 5 Usage with `RecordLinkage` package

Just use the `block` column in the argument `blockfld` in the `compare.dedup()` or `compare.linkage()` function. Please note that `block` column for the `RecordLinkage` package should be stored as a `character` not a `numeric/integer` vector.