Package: CovidMutations
Type: Package
Title: Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease
        2019)
Version: 0.1.3
Date: 2020-08-29
Authors@R: 
    c(
      person(
        "Shaoqian",
        "Ma",
        email = "shaoqianma@qq.com",
        role = c("aut", "cre"),
        comment = c(ORCID = '0000-0001-8950-0711')
      ),
      person(
        "Yongyou",
        "Zhang",
        email = "yongyouzhang@xmu.edu.cn",
        role = c("aut"),
        comment = c(ORCID = '0000-0003-2413-9106')
      )
      )
Description: A feasible framework for mutation analysis and reverse transcription 
  polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including 
  mutation profile visualization, statistics and mutation ratio of each assay. 
  The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in 
  large-sized samples. Mercatelli, D. and Giorgi, F. M. (2020) 
  <doi:10.20944/preprints202004.0529.v1>.
Depends: R (>= 3.6)
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
Imports: ggplot2, cowplot, seqinr, stringr, grDevices, graphics, utils,
        ggpubr, dplyr, VennDiagram
RoxygenNote: 7.1.1
NeedsCompilation: no
URL: https://github.com/MSQ-123/CovidMutations
BugReports: https://github.com/MSQ-123/CovidMutations/issues
Suggests: testthat
Packaged: 2020-09-11 08:10:05 UTC; lenovo
Author: Shaoqian Ma [aut, cre] (<https://orcid.org/0000-0001-8950-0711>),
  Yongyou Zhang [aut] (<https://orcid.org/0000-0003-2413-9106>)
Maintainer: Shaoqian Ma <shaoqianma@qq.com>
Repository: CRAN
Date/Publication: 2020-09-18 12:00:39 UTC
Built: R 4.7.0; ; 2026-05-09 04:12:16 UTC; windows
