Functions to Interact with the 'FAIR Data Pipeline'

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Documentation for package ‘rDataPipeline’ version 0.54.1

• DESCRIPTION file.
• Package NEWS.

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rDataPipeline-package	rDataPipeline
add_read	add_read
add_write	add_write
check_config	check_config
check_dataproduct_exists	check_dataproduct_exists
check_datetime	check_datetime
check_exists	Check if entry exists in the data registry
check_field	check_field
check_fields	check_fields
check_handle	check_handle
check_integer	check_integer
check_local_repo	check_local_repo
check_string	check_string
check_table_exists	Check if table exists
check_yaml_write	check_yaml_write
clean_query	Clean query
create_config	create_config
create_index	create_index
create_version_number	Create version number
download_from_database	Download source file from database
download_from_url	Download source file from URL
extract_id	extract_id
fair_init	fair_init
fair_run	fair_run
fdp	fdp-class
fdp-class	fdp-class
fdp_resolve_read	fdp_resolve_read
fdp_resolve_write	fdp_resolve_write
finalise	Finalise code run
findme	findme
find_read_match	Find matching read aliases in config file
find_write_match	Find matching write aliases in config file
get_author_url	get_author_url
get_components	Get H5 file components
get_dataproduct	get_dataproduct
get_entity	Get entity from url
get_entry	Return all fields associated with a table entry in the data registry
get_existing	Return all entries posted to a table in the data registry
get_fields	Get fields from table
get_file_hash	Calculate hash from file
get_github_hash	Get current GitHub hash
get_id	Get ID
get_index	get_index
get_max_version	get_max_version
get_storage_location	Get storage location from url
get_token	get_token
get_url	Get URL
increment_filename	increment_filename
initialise	Initialise code run
is_queryable	Check whether fields are queryable
link_read	Link path to external format data
link_write	Link path for external format data
new_author	Post entry to author table
new_code_repo_release	Post entry to code_repo_release table
new_code_run	Post entry to code_run table
new_data_product	Post entry to data_product table
new_external_object	Post entry to external_object table
new_file_type	Post entry to file_type table
new_issue	Post entry to issue table
new_keyword	Post entry to keyword table
new_licence	Post entry to licence table
new_namespace	Post entry to namespace table
new_object	Post entry to object table
new_object_component	Post entry to object_component table
new_quality_controlled	Post entry to quality_controlled table
new_storage_location	Post entry to storage_location table
new_storage_root	Post entry to storage_root table
new_user_author	Post entry to user_author table
paper_exists	Check whether paper exists
raise_issue	raise_issue
raise_issue_config	Raise issue with config file
raise_issue_repo	Raise issue with remote repository
raise_issue_script	Raise issue with submission script
random_hash	random_hash
rDataPipeline	rDataPipeline
read_array	Read array component from HDF5 file
read_distribution	Read distribution component from TOML file
read_estimate	Read estimate component from TOML file
read_table	Read table component from HDF5 file
register_issue_dataproduct	register_issue_dataproduct
register_issue_script	register_issue_script
remove_empty_parents	remove_empty_parents
resolve_read	resolve_read
resolve_version	resolve_version
resolve_write	resolve_data_product
validate_fields	Validate fields
write_array	Write array component to HDF5 file
write_distribution	Write distribution component to TOML file
write_estimate	Write estimate component to TOML file
write_table	Write table component to HDF5 file