AgriLand                Landscape allocation
CroptypeBDD2Params      CroptypeBDD2Params
CultivarBDD2Params      CultivarBDD2Params
CultivarGeneBDD2Params
                        CultivarGeneBDD2Params
GPKGAddInputData        GPKGAddInputData
GPKGAddTables           GPKGAddTables
GeneBDD2Params          GeneBDD2Params
LandsepiParams          Class LandsepiParams
allocateCroptypeCultivars
                        Allocate cultivars to one croptype
allocateCultivarGenes   Allocate genes to a cultivar
allocateLandscapeCroptypes
                        Allocate croptypes to the landscape
checkCroptypes          Check croptypes
checkCultivars          Check cultivars
checkCultivarsGenes     Check cultivars genes
checkDispersalHost      Check host dispersal
checkDispersalPathogen
                        Check pathogen dispersal
checkGenes              Check genes
checkInoculum           Check inoculum
checkLandscape          Check the landscape
checkOutputs            Check outputs
checkPathogen           Check pathogen
checkSimulParams        Check simulation parameters
checkTime               Check time
createLandscapeGPKG     createLandscapeGPKG
createSimulParams       Create a LandsepiParams object.
demo_landsepi           Package demonstration
dispP                   Dispersal matrices for rust fungi of cereal
                        crops.
epid_output             Generation of epidemiological and economic
                        model outputs
evol_output             Generation of evolutionary model outputs
getGPKGArea             getGPKGArea
getGPKGCroptypes        getGPKGCroptypes
getGPKGCroptypesRaw     getGPKGCroptypesRaw
getGPKGCultivars        getGPKGCultivars
getGPKGCultivarsGenes   getGPKGCultivarsGenes
getGPKGGeneIDForCultivar
                        getGPKGGeneIDForCultivar
getGPKGGenes            getGPKGGenes
getGPKGRotation         getGPKGRotation
initialize,LandsepiParams-method
                        LandsepiParams
invlogit                Inverse logit function
is.in.01                is.in.01
is.positive             is.positive
is.strict.positive      is.strict.positive
is.wholenumber          is.wholenumber
landscapeTEST           Landscapes
landsepi-package        Landscape Epidemiology and Evolution
loadCroptypes           Load Croptypes
loadCultivar            Load a cultivar
loadDispersalHost       Load a host dispersal matrix
loadDispersalPathogen   Load a pathogen dispersal matrix
loadGene                Load a gene
loadLandscape           Load a landscape
loadOutputs             Load outputs
loadPathogen            Load pathogen parameters
loadSimulParams         Load simulation parameters
logit                   Logit function
model_landsepi          Model for Landscape Epidemiology & Evolution
multiN                  Allocation of cultivars
params2CroptypeBDD      params2CroptypeBDD
params2CultivarBDD      params2CultivarBDD
params2GeneBDD          params2GeneBDD
params2GeneListBDD      params2GeneListBDD
periodic_cov            Periodic covariance function
plot_allocation         Plotting allocation of croptypes in a landscape
plot_freqPatho          Plotting pathotype frequencies
plotland                Plotting the landscape
print                   print
resetCultivarsGenes     Reset cultivars genes
runShinyApp             runShinyApp
runSimul                Run a simulation
saveDeploymentStrategy
                        Save landscape and deployment strategy
setCroptypes            Set croptypes
setCultivars            Set cultivars
setDispersalHost        Set host dispersal
setDispersalPathogen    Set pathogen dispersal
setGenes                Set genes
setInoculum             Set inoculum
setLansdcape            Set the landscape
setOutputs              Set outputs
setPathogen             Set the pathogen
setSeed                 Set the seed
setSeedValue            setSeedValue
setTime                 Set time parameters
show                    show
simul_landsepi          Simulation with input parameters as
                        data.frames.
summary                 summary
switch_patho_to_aggr    Switch from index of genotype to indices of
                        agressiveness on different components
video                   Generation of a video
