vivaldi: Viral Variant Location and Diversity

Analysis of minor alleles in Illumina sequencing data of viral genomes. Functions in 'vivaldi' primarily operate on vcf files.

Version: 1.0.1
Depends: R (≥ 2.10)
Imports: dplyr (≥ 1.0.2), ggplot2 (≥ 3.3.2), glue (≥ 1.4.2), magrittr (≥ 2.0.1), plotly (≥ 4.10.0), seqinr (≥ 4.2-8), tidyr (≥ 1.1.2), tidyselect (≥ 1.1.2), vcfR (≥ 1.12.0)
Suggests: kableExtra, knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2023-03-21
DOI: 10.32614/CRAN.package.vivaldi
Author: Marissa Knoll [aut], Katherine Johnson [aut], Megan Hockman [aut], Eric Borenstein [aut], Mohammed Khalfan [aut], Elodie Ghedin [aut], David Gresham [aut, cre, cph]
Maintainer: David Gresham <dg107 at nyu.edu>
BugReports: https://github.com/GreshamLab/vivaldi/issues
License: MIT + file LICENSE
URL: https://github.com/GreshamLab/vivaldi
NeedsCompilation: no
Citation: vivaldi citation info
Materials: README
CRAN checks: vivaldi results

Documentation:

Reference manual: vivaldi.pdf
Vignettes: vignette

Downloads:

Package source: vivaldi_1.0.1.tar.gz
Windows binaries: r-devel: vivaldi_1.0.1.zip, r-release: vivaldi_1.0.1.zip, r-oldrel: vivaldi_1.0.1.zip
macOS binaries: r-release (arm64): vivaldi_1.0.1.tgz, r-oldrel (arm64): vivaldi_1.0.1.tgz, r-release (x86_64): vivaldi_1.0.1.tgz, r-oldrel (x86_64): vivaldi_1.0.1.tgz
Old sources: vivaldi archive

Linking:

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