Version 0.3.5 (2025-10-19) * (Performance) Specialized fast `single_gap_search` algorithm, see `RadixTree$single_gap_search` Version 0.3.3 (2025-10-04) * (Performance) Implement Ukkonen style banding to limit DP calculations to near diagonals, improves performance 30-40% Version 0.3.1 (2025-10-03) * (Performance) Reworked trie alignment searches to reuse dynamic-programming workspaces Version 0.3.0 (2025-09-05) * Code cleanup, documentation cleanup, cleaner interface * Minor bug fixes Version 0.2.9 (2025-02-27) * Use `STRING_PTR_RO` instead of `STRING_PTR` to align with C API * Use `pwalign` instead of `Biostrings` to test alignment (deprecated as of `Biostrings` 2.75.1 on R-devel 3.5) Version 0.2.8 (2024-05-03) * Conditionally run tests if required packages are installed Version 0.2.7 (2024-01-25) * Add Ankerl unordered_dense conditional on C++17 support * Add `pwalign` package to suggests field which is responsible for pairwiseAlignment in the biostrings package in BioC 3.19 Version 0.2.6 (2024-01-25) * Minor fix for CRAN checks, std::basic_string deprecated in Clang 18