## ----setup, include = FALSE------------------------------------------------------------------------------------------------------------------------- options(width = 150) knitr::opts_chunk$set( collapse = TRUE, comment = "#>", fig.align = "center", fig.height = 5, fig.width = 7, out.width = "90%" ) ## ----packages--------------------------------------------------------------------------------------------------------------------------------------- library(rsimsum) library(ggplot2) ## ----data-1----------------------------------------------------------------------------------------------------------------------------------------- data("relhaz", package = "rsimsum") ## ----inspect-1-------------------------------------------------------------------------------------------------------------------------------------- str(relhaz) head(relhaz, n = 15) ## ----summarise-1------------------------------------------------------------------------------------------------------------------------------------ s1 <- simsum( data = relhaz, estvarname = "theta", se = "se", true = -0.50, methodvar = "model", by = c("n", "baseline"), x = TRUE ) s1 ## ----summary-summarise-1---------------------------------------------------------------------------------------------------------------------------- summary(s1) ## ----plot-est--------------------------------------------------------------------------------------------------------------------------------------- autoplot(s1, type = "est") ## ----plot-se---------------------------------------------------------------------------------------------------------------------------------------- autoplot(s1, type = "se") ## ----plot-est-ba------------------------------------------------------------------------------------------------------------------------------------ autoplot(s1, type = "est_ba") ## ----ridge-est-1------------------------------------------------------------------------------------------------------------------------------------ autoplot(s1, type = "est_ridge") ## ----lolly-bias-1----------------------------------------------------------------------------------------------------------------------------------- autoplot(summary(s1), type = "lolly", stats = "bias") ## ----lolly-bias-1.1--------------------------------------------------------------------------------------------------------------------------------- autoplot(summary(s1), type = "lolly", stats = "rbias") ## ----lolly-bias-2----------------------------------------------------------------------------------------------------------------------------------- autoplot(s1, type = "lolly", stats = "bias") ## ----lolly-coverage-1------------------------------------------------------------------------------------------------------------------------------- autoplot(summary(s1), type = "lolly", stats = "cover") ## ----forest-bias-1---------------------------------------------------------------------------------------------------------------------------------- autoplot(s1, type = "forest", stats = "bias") ## ----forest-bias-2---------------------------------------------------------------------------------------------------------------------------------- autoplot(summary(s1), type = "forest", stats = "bias") ## ----zipper-1--------------------------------------------------------------------------------------------------------------------------------------- autoplot(s1, type = "zip") ## ----zipper-zoom------------------------------------------------------------------------------------------------------------------------------------ autoplot(s1, type = "zip", zoom = 0.3) ## ----heat-bias-1------------------------------------------------------------------------------------------------------------------------------------ autoplot(s1, type = "heat", stats = "bias") ## ----plot-est-density------------------------------------------------------------------------------------------------------------------------------- autoplot(s1, type = "est_density") ## ----plot-est-hex----------------------------------------------------------------------------------------------------------------------------------- autoplot(s1, type = "est_hex") ## ----add-theme-------------------------------------------------------------------------------------------------------------------------------------- autoplot(summary(s1), type = "lolly", stats = "bias") + ggplot2::theme_bw() ## ----add-theme-default------------------------------------------------------------------------------------------------------------------------------ autoplot(summary(s1), type = "lolly", stats = "bias") ## ----heat-bias-viridis------------------------------------------------------------------------------------------------------------------------------ autoplot(s1, type = "heat", stats = "bias") + ggplot2::scale_fill_viridis_c() ## ----colour-palette--------------------------------------------------------------------------------------------------------------------------------- autoplot(s1, type = "est_ridge") + scale_fill_viridis_d() + scale_colour_viridis_d()