rbioapi: User-Friendly R Interface to Biologic Web Services' API

Currently fully supports Enrichr, JASPAR, miEAA, PANTHER, Reactome, STRING, and UniProt! The goal of rbioapi is to provide a user-friendly and consistent interface to biological databases and services. In a way that insulates the user from the technicalities of using web services API and creates a unified and easy-to-use interface to biological and medical web services. This is an ongoing project; New databases and services will be added periodically. Feel free to suggest any databases or services you often use.

Version: 0.8.2
Imports: httr, jsonlite, utils
Suggests: DT, knitr, png, rmarkdown, testthat (≥ 3.0.0)
Published: 2025-02-07
DOI: 10.32614/CRAN.package.rbioapi
Author: Moosa Rezwani ORCID iD [aut, cre]
Maintainer: Moosa Rezwani <moosa.rezwani at gmail.com>
BugReports: https://github.com/moosa-r/rbioapi/issues
License: GPL-3
URL: https://rbioapi.moosa-r.com, https://github.com/moosa-r/rbioapi
NeedsCompilation: no
Citation: rbioapi citation info
Materials: NEWS
CRAN checks: rbioapi results [issues need fixing before 2025-07-03]

Documentation:

Reference manual: rbioapi.pdf
Vignettes: 1: rbioapi: User-Friendly R Interface to Biologic Web Services' API (source, R code)
3.A: Do with rbioapi: Enrichment (Over-Representation) Analysis in R (source, R code)
2.A: Enrichr & rbioapi (source, R code)
2.B: JASPAR & rbioapi (source, R code)
2.C: miEEA & rbioapi (source, R code)
2.D: PANTHER & rbioapi (source, R code)
2.E: Reactome & rbioapi (source, R code)
2.F: STRING & rbioapi (source, R code)
2.G: UniProt & rbioapi (source, R code)

Downloads:

Package source: rbioapi_0.8.2.tar.gz
Windows binaries: r-devel: rbioapi_0.8.2.zip, r-release: rbioapi_0.8.2.zip, r-oldrel: rbioapi_0.8.2.zip
macOS binaries: r-release (arm64): rbioapi_0.8.2.tgz, r-oldrel (arm64): rbioapi_0.8.2.tgz, r-release (x86_64): rbioapi_0.8.2.tgz, r-oldrel (x86_64): rbioapi_0.8.2.tgz
Old sources: rbioapi archive

Reverse dependencies:

Reverse suggests: GRaNIE

Linking:

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