## ----include = FALSE-------------------------------------------------------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) local({ source_hook <- knitr::knit_hooks$get("source") knitr::knit_hooks$set(source = function(x, options) { old_opts <- options(width = 120L) on.exit(options(old_opts)) source_hook(x, options) }) }) ## ----setup------------------------------------------------------------------------------------------------------------ library(covtracer) ## ----include = FALSE-------------------------------------------------------------------------------------------------- library(withr) library(covr) withr::with_temp_libpaths({ options(keep.source = TRUE, keep.source.pkg = TRUE, covr.record_tests = TRUE) examplepkg_source_path <- system.file("examplepkg", package = "covtracer") install.packages( examplepkg_source_path, type = "source", repos = NULL, quiet = TRUE, INSTALL_opts = c("--with-keep.source", "--install-tests") ) examplepkg_cov <- covr::package_coverage(examplepkg_source_path) examplepkg_ns <- getNamespace("examplepkg") }) ## --------------------------------------------------------------------------------------------------------------------- print(examplepkg_ns$hypotenuse) ## --------------------------------------------------------------------------------------------------------------------- getSrcref(covtracer::test_trace_df) ## --------------------------------------------------------------------------------------------------------------------- # get line and column ranges (for details see ?srcref) as.numeric(getSrcref(covtracer::test_trace_df)) ## --------------------------------------------------------------------------------------------------------------------- getSrcFilename(covtracer::test_trace_df) ## ----eval = FALSE----------------------------------------------------------------------------------------------------- # library(withr) # library(covr) # # withr::with_temp_libpaths({ # options(keep.source = TRUE, keep.source.pkg = TRUE, covr.record_tests = TRUE) # examplepkg_source_path <- system.file("examplepkg", package = "covtracer") # install.packages( # examplepkg_source_path, # type = "source", # repos = NULL, # INSTALL_opts = c("--with-keep.source", "--install-tests") # ) # examplepkg_cov <- covr::package_coverage(examplepkg_source_path) # examplepkg_ns <- getNamespace("examplepkg") # }) ## ----include = FALSE-------------------------------------------------------------------------------------------------- pkg_srcrefs(examplepkg_ns)[1] # for brevity, only showing first srcref ## ----eval = FALSE----------------------------------------------------------------------------------------------------- # pkg_srcrefs(examplepkg_ns)["test_description.character"] ## --------------------------------------------------------------------------------------------------------------------- head(pkg_srcrefs_df(examplepkg_ns)) ## --------------------------------------------------------------------------------------------------------------------- df <- pkg_srcrefs_df(examplepkg_ns) df$srcref[[1L]] ## --------------------------------------------------------------------------------------------------------------------- examplepkg_test_srcrefs <- test_srcrefs(examplepkg_cov) ## ----eval = FALSE----------------------------------------------------------------------------------------------------- # getSrcFilename(examplepkg_test_srcrefs[[1]]) ## ----echo = FALSE----------------------------------------------------------------------------------------------------- # execute this code instead, which avoids a vignette error on R devel getSrcFilename(examplepkg_test_srcrefs[1][[1]]) ## --------------------------------------------------------------------------------------------------------------------- head(examplepkg_test_srcrefs) ## --------------------------------------------------------------------------------------------------------------------- examplepkg_cov[[1]]$srcref ## --------------------------------------------------------------------------------------------------------------------- examplepkg_trace_srcrefs <- trace_srcrefs(examplepkg_cov) examplepkg_trace_srcrefs[1] ## --------------------------------------------------------------------------------------------------------------------- head(trace_srcrefs_df(examplepkg_cov))