| RFLPtools-package | Tools To Analyse RFLP-Data | 
| BLASTdata | Example data set for BLAST data | 
| diffDist | Distance Matrix Computation | 
| FragMatch | Compute matches for RFLP data via FragMatch. | 
| germ | Compute matches for RFLP data via GERM. | 
| linCombDist | Linear Combination of Distances | 
| newDataGerm | Example data set from GERM software | 
| nrBands | Function to compute number of bands. | 
| read.blast | Read BLAST data | 
| read.rflp | Read RFLP data | 
| refDataGerm | Example data set from GERM software | 
| RFLPcombine | Combine RFLP data sets | 
| RFLPdata | Example data set for RFLP data | 
| RFLPdist | Compute distances for RFLP data. | 
| RFLPdist2 | Compute distances for RFLP data. | 
| RFLPdist2ref | Compute distance between RFLP data and RFLP reference data. | 
| RFLPlod | Remove bands below LOD | 
| RFLPplot | Function to plot RFLP data. | 
| RFLPqc | Quality control for RFLP data | 
| RFLPref | Example data set for RFLP reference | 
| RFLPrefplot | Function for a visual comparison of RFLP samples with reference samples. | 
| RFLPtools | Tools To Analyse RFLP-Data | 
| sim2dist | Convert similarity matrix to dist object. | 
| simMatrix | Similarity matrix for BLAST data. | 
| simulateRFLPdata | Simulate RFLP data. | 
| write.hclust | Cut a hierarchical cluster tree and write cluster identifiers to a text file. |