R Toolkit for Mass Spectrometry

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Documentation for package ‘rtms’ version 0.2.0

• DESCRIPTION file.

Help Pages

close.rtmsBrukerMCFReader	Manage an MCF reader file connection
closeBrukerMCFReader	Manage an MCF reader file connection
emptySampleSet	Generate an empty RTMS sample set
exampleSpectrum	Simple Example Spectrum
getBrukerBAFAllMetadata	Retrieve all metadata values from a Bruker BAF file
getBrukerBAFMetadata	Retrieve specific metadata values from a Bruker BAF file
getBrukerBAFSample	Extract a sample from a Bruker BAF directory
getBrukerBAFSpectrum	Extract a spectrum from a Bruker BAF directory
getBrukerMCFAllMetadata	Retrieve all metadata values from a Bruker MCF file
getBrukerMCFIndices	Get spot names and indices from a Bruker MCF file
getBrukerMCFIntensities	Retrieve peak intensities directly from an MCF file
getBrukerMCFMetadata	Retrieve specific metadata values from a Bruker BAF file
getBrukerMCFSample	Extract a sample from a Bruker MCF directory
getBrukerMCFSampleSet	Extract a sample set from a Bruker MCF directory
getBrukerMCFSpectrum	Extract a spectrum from a Bruker MCF directory
getBrukerMCFSpots	Get spot names and indices from a Bruker MCF file
getSample	Get an RTMS Sample
getSample.rtmsBrukerBAFReader	Extract a sample from a Bruker BAF directory
getSample.rtmsBrukerMCFReader	Extract a sample from a Bruker MCF directory
getSample.rtmsSpectrum	Extract a sample from an RTMS spectrum object
getSampleFromSpectrum	Extract a sample from an RTMS spectrum object
getSampleSet	Get an RTMS Sample Set
getSampleSet.rtmsBrukerMCFReader	Extract a sample set from a Bruker MCF directory
getSpectrum	Get an RTMS Spectrum
getSpectrum.rtmsBrukerBAFReader	Extract a spectrum from a Bruker BAF directory
getSpectrum.rtmsBrukerMCFReader	Extract a spectrum from a Bruker MCF directory
measureSample	Measure peaks in an RTMS sample
measureSampleSet	Measure peaks and samples in an RTMS sample set
newBrukerBAFReader	Open a Bruker single-acquisition BAF directory
newBrukerMCFReader	Open a Bruker multi-acquisition MCF directory
plotRtmsSample	Plot an RTMS sample object
plotRtmsSampleSet	Plot an RTMS sample set object
plotRtmsSpectrum	Plot an RTMS spectrum object
reopen	Reopen a reader object
reopen.rtmsBrukerMCFReader	Manage an MCF reader file connection
reopenBrukerMCFReader	Manage an MCF reader file connection
rep.rtmsSample	Functions for creating and manipulating samples and sample sets
rep.rtmsSampleSet	Functions for creating and manipulating samples and sample sets
rtmsPeak	Create an RTMS m/z Peak Object
rtmsPeakList	Create a list of RTMS m/z peak objects
rtmsSpectrum	Create a new RTMS spectrum
sampleAndSampleSet	Functions for creating and manipulating samples and sample sets
[.rtmsSampleSet	Functions for creating and manipulating samples and sample sets
[[.rtmsSampleSet	Functions for creating and manipulating samples and sample sets
[[<-.rtmsSampleSet	Functions for creating and manipulating samples and sample sets