# Localization Microscopy Data Analysis

## Documentation for package ‘LOMAR’ version 0.5.2

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

apply_transformation | apply_transformation
ary2ps | ary2ps
binning | binning
circle_hough_transform | Circle Hough transform
coloc_index | coloc_index
costWd | costWd
cpd | cpd
crop_point_set | crop_point_set
denoise | denoise
dist_to_boundary | dist_to_boundary
dist_to_line | dist_to_line
downsample | downsample
find_elbow | find_elbow
Gaussian_Wd | Gaussian_Wd
get_kernel_matrix | get_kernel_matrix
get_persistence_diagrams | get_persistence_diagrams
get_shape | get_shape
get_surface_area | get_surface_area
GMM_Wd | GMM_Wd
gradientWd | gradientWd
group_events | group_events
icp | icp
idx2rowcol | idx2rowcol
img2ps | img2ps
jrmpc | jrmpc
local_densities | local_densities
locprec2cov | locprec2cov
locs2ps | locs2ps
locs_from_csv | locs_from_csv
multiple_registration | multiple_registration
points2img | points2img
points_from_roi | points_from_roi
point_sets_from_locs | point_sets_from_locs
point_sets_from_tiffs | point_sets_from_tiffs
ps2ary | ps2ary
pssk | pssk
q2dr | Get derivative of 3D rotation matrix from quaternion
q2r | Convert quaternion to rotation matrix http://en.wikipedia.org/wiki/Quaternions_and_spatial_rotation
restore_coordinates | restore_coordinates
rotx | rotx
roty | roty
rotz | rotz
scale_alpha_shape | scale_alpha_shape
shape_features_3d | shape_features_3d
sliced_Wd | sliced_Wd
standardize_coordinates | standardize_coordinates
tr | tr
wgmmreg | wgmmreg