An Interface Between the 'FSKX' Standard and 'R'

---

Documentation for package ‘FSK2R’ version 0.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

check_manifest_files	Checks that the files defined in the manifest exist
clean_empty_values	Recursively clean object by removing empty values
clean_json_string	Clean empty values from JSON string
convert_metadata_to_lists	Fix the metadat so that it is lists
create_fsk	Creates an FSK model from an existing R script
dataframe_to_list	Converts a dataframe to a list
export_fsk	Exports an object of FSK class as an .fskx file
export_manifest	Functions for exporting the manifest of an FSK2R object
export_metadata	Function for exporting the metadata of an FSK2R object
export_modelmetadata	Functions for exporting the model metadata of an FSK2R object
export_otherfiles	Export other files
export_packages	Functions for exporting the packages of an FSK2R object
export_readme	Functions for exporting the README of an FSK2R object
export_R_model	Functions for exporting the R model of an FSK2R object
export_sbmlModel	Export the model.sbml
export_simulation	Export the sim.sedml
export_visualization	Functions for exporting the visualization script of an FSK2R object
export_workspace	Functions for exporting the workspace of an FSK2R object
extract_script_filenames_from_rdf	Extract script filenames from RDF metadata
find_packages	Finds where packages are stored
FSKAuthor	Author Information
FSKCreator	Author Information
FSKDataBackground	Data Background Section
FSKGeneralInformation	General Information Section
FSKMetadata	FSK Metadata Classes
FSKModelCategory	Model Category Information
FSKModelMath	Model Math Section
FSKParameter	Parameter Information
FSKReference	Reference Information
FSKScope	Scope Section
FSK_runner	Startup FSK runner
get_background	Returns the background of an FSK object
get_general_info	Returns the general info of an FSK object
get_modelmath	Returns the model math of an FSK object
get_readme	Readme of an FSK object
get_scope	Returns the scope of an FSK object
get_session_info	Extract session information
get_simulations	Returns a summary of the simulations of an FSK object
import_fsk	Import an FSK model into R
import_fsk_join	Import of FSK with join node
is.FSK2R	Is it an instance of FSK2R?
is_fsk_with_r	Does the object have an R model?
map_FSK_metadata	Map for the contents of the metadata
map_metadata_xml_template	Map between the names used in the template and the xml
metadata_list_to_fsk	From read_fsk_metadata_XX to FSK2R format
n_simuls_fsk	Number of simulations in the FSK2R object
read_fsk_json_metadata	Read the metadata.json file
read_fsk_manifest	Read the manifest of an FSK file and convert it to a data.frame
read_fsk_metadata_excel	FSK metadata from local Excel file
read_fsk_model	Read the model.sbml
read_fsk_packages	Read the packages.json
read_fsk_rdf_metadata	Read the metadata.rdf
read_fsk_readme	Read the README file
read_fsk_sim	Read the sim.sedml file
read_other_files	Read "other files"
read_R_model	Reads the R model in an FSK model
read_visualization	Reads the visualization script in an FSK model
run_all_simulations	Run every simulation in an FSK object
run_simulation	Run one simulation in an FSK object
set_new_simulation	Define a new simulation in an FSK2R object
set_readme	Readme of an FSK object
update_manifest	Updates the manifest file