| BoolFilter-package | Optimal Estimation of Partially-Observed Boolean Dynamical Systems |
| BKF | Boolean Kalman Filter |
| BKS | Boolean Kalman Smoother |
| BoolFilter | Optimal Estimation of Partially-Observed Boolean Dynamical Systems |
| melanoma | Melanoma Regulatory Network |
| MMAE | Multiple Model Adaptive Estimation |
| p53net_DNAdsb0 | p53 Negative-Feedback Gene Regulatory Boolean Network |
| p53net_DNAdsb1 | p53 Negative-Feedback Gene Regulatory Boolean Network |
| plotTrajectory | Plot state variables of Boolean Regulatory Systems |
| simulateNetwork | Simulate Boolean Network |
| SIR_BKF | Particle Filter |