Bioinformatics Modeling with Recursion and Autoencoder-Based Ensemble

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Documentation for package ‘BioMoR’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

biomor_benchmark	Benchmark a trained model
biomor_run_pipeline	Run full BioMoR pipeline
brier_score	Compute Brier Score
calibrate_model	Calibrate model probabilities
compute_f1_threshold	Compute optimal threshold for maximum F1 score
get_cv_control	Get caret cross-validation control
get_embeddings	Get Embeddings from Autoencoder (stub)
prepare_model_data	Prepare dataset for modeling
train_autoencoder	Train Autoencoder (stub)
train_biomor	Train BioMoR Autoencoder
train_rf	Train a Random Forest model with caret
train_xgb_caret	Train an XGBoost model with caret