* using log directory 'd:/Rcompile/CRANpkg/local/4.6/warbleR.Rcheck'
* using R Under development (unstable) (2025-07-30 r88476 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'warbleR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'warbleR' version '1.1.36'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'warbleR' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 14.2.0'
* checking installed package size ... INFO
  installed size is  7.7Mb
  sub-directories of 1Mb or more:
    doc   5.4Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking whether startup messages can be suppressed ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s] OK
* checking Rd files ... [2s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [53s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [26s] ERROR
Error(s) in re-building vignettes:
--- re-building 'a_warbleR.Rmd' using rmarkdown
--- finished re-building 'a_warbleR.Rmd'

--- re-building 'b_annotation_data_format.Rmd' using rmarkdown

Quitting from b_annotation_data_format.Rmd:536-550 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(results)[match(c("id", "gen", "sp", "ssp", "en", "rec", "cnt", "loc", "lat", "lng", "alt",
    "type", "file", "lic", "url", "q", "length", "time", "date", "uploaded", "rmk", "bird.seen",
    "playback.used"), names(results))] <- c("Recording_ID", "Genus", "Specific_epithet", "Subspecies",
    "English_name", "Recordist", "Country", "Locality", "Latitude", "Longitude", "Altitude",
    "Vocalization_type", "Audio_file", "License", "Url", "Quality", "Length", "Time", "Date",
    "Uploaded", "Remarks", "Bird_seen", "Playback_used")[which(c("id", "gen", "sp", "ssp", "en",
    "rec", "cnt", "loc", "lat", "lng", "alt", "type", "file", "lic", "url", "q", "length", "time",
    "date", "uploaded", "rmk", "bird.seen", "playback.used") %in% names(results))]`:
! NAs are not allowed in subscripted assignments
---
Backtrace:
    ▆
 1. └─warbleR::query_xc(qword = "nr:15607", download = TRUE, path = tempdir())
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'b_annotation_data_format.Rmd' failed with diagnostics:
NAs are not allowed in subscripted assignments
--- failed re-building 'b_annotation_data_format.Rmd'

--- re-building 'c_warbleR_workflow_02.Rmd' using rmarkdown
--- finished re-building 'c_warbleR_workflow_02.Rmd'

SUMMARY: processing the following file failed:
  'b_annotation_data_format.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [26s] OK
* checking HTML version of manual ... [17s] OK
* DONE
Status: 1 ERROR