aa2char	conversion
allocateCVI	allocateCVI
char2aa	conversion
char2dna	conversion
classify	classify
conversion	conversion
decodePHMM	encoding
demultiplex	demultiplex
dereplicate	replicate
disambiguate	disambiguate
dna2char	conversion
duplicated.AAbin	manipulate
duplicated.DNAbin	manipulate
encodePHMM	encoding
encoding	encoding
expand	expand
get_lineage	get_lineage
get_taxID	get_taxID
hash	hash
insect	insect
join	join
learn	learn
manipulate	manipulate
prune_taxonomy	prune_taxonomy
purge	purge
qfilter	qfilter
rc	rc
read	read
readFASTA	read
readFASTQ	read
replicate	replicate
rereplicate	replicate
samoa	samoa
searchGB	searchGB
shave	shave
stitch	stitch
subset.AAbin	manipulate
subset.DNAbin	manipulate
taxonomy	taxonomy
trim	trim
unique.AAbin	manipulate
unique.DNAbin	manipulate
virtualFISH	virtualFISH
virtualPCR	virtualPCR
whales	whales
whale_taxonomy	whale_taxonomy
write	write
writeFASTA	write
writeFASTQ	write
