.get_ott_lineage	dot-get_ott_lineage
birds_and_cats	birds_and_cats
build_grove_list	build_grove_list
build_grove_matrix	build_grove_matrix
check_conflicting_calibrations	check_conflicting_calibrations
check_ott_input	check_ott_input
choose_cluster	choose_cluster
classification_paths_from_taxonomy	classification_paths_from_taxonomy
clean_ott_chronogram	clean_ott_chronogram
clean_taxon_info_children	clean_taxon_info_children
clean_tnrs	clean_tnrs
cluster_patristicmatrix	cluster_patristicmatrix
congruify_and_check	congruify_and_check
congruify_and_mrca_multiPhylo	congruify_and_mrca_multiPhylo
congruify_and_mrca_phylo	congruify_and_mrca_phylo
contributor_cache	contributor_cache
datelife	datelife_search
datelife_authors_tabulate	datelife_authors_tabulate
datelife_calibrations	get_all_calibrations
datelife_result_median	datelife_result_median
datelife_result_median_matrix	datelife_result_median_matrix
datelife_result_MRCA	datelife_result_MRCA
datelife_result_sdm_matrix	datelife_result_sdm_matrix
datelife_result_sdm_phylo	datelife_result_sdm_phylo
datelife_result_study_index	datelife_result_study_index
datelife_result_variance_matrix	datelife_result_variance_matrix
datelife_search	datelife_search
datelife_use	datelife_use
datelife_use_datelifequery	datelife_use_datelifequery
date_with_pbdb	date_with_pbdb
extract_calibrations_dateliferesult	extract_calibrations_dateliferesult
extract_calibrations_phylo	extract_calibrations_phylo
extract_ott_ids	extract_ott_ids
extract_ott_ids.default	extract_ott_ids
felid_gdr_phylo_all	felid_gdr_phylo_all
felid_sdm	felid_sdm
filter_for_grove	filter_for_grove
force_ultrametric	force_ultrametric
get_all_calibrations	get_all_calibrations
get_all_descendant_species	get_all_descendant_species
get_best_grove	get_best_grove
get_biggest_multiphylo	get_biggest_multiphylo
get_bold_data	get_bold_data
get_calibrations_datelifequery	get_calibrations_datelifequery
get_calibrations_vector	get_calibrations_vector
get_dated_otol_induced_subtree	get_dated_otol_induced_subtree
get_datelife_result	get_datelife_result
get_datelife_result_datelifequery	get_datelife_result_datelifequery
get_fossil_range	get_fossil_range
get_goodmatrices	get_goodmatrices
get_mrbayes_node_constraints	get_mrbayes_node_constraints
get_opentree_chronograms	get_opentree_chronograms
get_opentree_species	get_opentree_species
get_otol_chronograms	get_opentree_chronograms
get_otol_synthetic_tree	get_otol_synthetic_tree
get_ott_children	get_ott_children
get_ott_clade	get_ott_clade
get_ott_lineage	get_ott_lineage
get_subset_array_dispatch	get_subset_array_dispatch
get_taxon_summary	get_taxon_summary
get_tnrs_names	get_tnrs_names
get_valid_children	get_valid_children
input_process	input_process
is_datelife_query	is_datelife_query
is_datelife_result_empty	is_datelife_result_empty
is_good_chronogram	is_good_chronogram
is_n_overlap	is_n_overlap
make_all_associations	make_all_associations
make_bladj_tree	make_bladj_tree
make_bold_otol_tree	make_bold_otol_tree
make_contributor_cache	make_contributor_cache
make_datelife_query	make_datelife_query
make_datelife_query2	make_datelife_query2
make_mrbayes_runfile	make_mrbayes_runfile
make_mrbayes_tree	make_mrbayes_tree
make_otol_associations	make_otol_associations
make_overlap_table	make_overlap_table
make_sdm	make_sdm
make_treebase_associations	make_treebase_associations
make_treebase_cache	make_treebase_cache
map_nodes_ott	map_nodes_ott
match_all_calibrations	match_all_calibrations
matrices_to_table	matrices_to_table
matrix_to_table	matrix_to_table
message_multiphylo	message_multiphylo
missing_taxa_check	missing_taxa_check
mrca_calibrations	mrca_calibrations
opentree_chronograms	opentree_chronograms
patristic_matrix_array_congruify	patristic_matrix_array_congruify
patristic_matrix_array_phylo_congruify	patristic_matrix_array_phylo_congruify
patristic_matrix_array_split	patristic_matrix_array_split
patristic_matrix_array_subset	patristic_matrix_array_subset
patristic_matrix_array_subset_both	patristic_matrix_array_subset_both
patristic_matrix_list_to_array	patristic_matrix_list_to_array
patristic_matrix_MRCA	patristic_matrix_MRCA
patristic_matrix_name_order_test	patristic_matrix_name_order_test
patristic_matrix_name_reorder	patristic_matrix_name_reorder
patristic_matrix_pad	patristic_matrix_pad
patristic_matrix_taxa_all_matching	patristic_matrix_taxa_all_matching
patristic_matrix_to_newick	patristic_matrix_to_newick
patristic_matrix_to_phylo	patristic_matrix_to_phylo
patristic_matrix_unpad	patristic_matrix_unpad
phylo_check	phylo_check
phylo_congruify	phylo_congruify
phylo_generate_uncertainty	phylo_generate_uncertainty
phylo_get_node_numbers	phylo_get_node_numbers
phylo_get_subset_array	phylo_get_subset_array
phylo_get_subset_array_congruify	phylo_get_subset_array_congruify
phylo_has_brlen	phylo_has_brlen
phylo_prune_missing_taxa	phylo_prune_missing_taxa
phylo_subset_both	phylo_subset_both
phylo_tiplabel_space_to_underscore	phylo_tiplabel_space_to_underscore
phylo_tiplabel_underscore_to_space	phylo_tiplabel_underscore_to_space
phylo_to_patristic_matrix	phylo_to_patristic_matrix
pick_grove	pick_grove
plant_bold_otol_tree	plant_bold_otol_tree
problems	problems
recover_mrcaott	recover_mrcaott
relevant_curators_tabulate	relevant_curators_tabulate
results_list_process	results_list_process
run	run
run_mrbayes	run_mrbayes
sample_trees	sample_trees
some_ants_datelife_result	some_ants_datelife_result
subset2_search	subset2_search
subset2_taxa	subset2_taxa
summarize_congruifiedCalibrations	summarize_congruifiedCalibrations
summarize_datelife_result	summarize_datelife_result
summarize_fossil_range	summarize_fossil_range
summarize_summary_matrix	summarize_summary_matrix
summary.datelifeResult	summary.datelifeResult
summary.matchedCalibrations	summary.matchedCalibrations
summary_matrix_to_phylo	summary_matrix_to_phylo
summary_matrix_to_phylo_all	summary_matrix_to_phylo_all
summary_patristic_matrix_array	summary_patristic_matrix_array
threebirds_dr	threebirds_dr
tnrs_match	tnrs_match
tnrs_match.default	tnrs_match
tnrs_match.phylo	tnrs_match
treebase_cache	treebase_cache
tree_add_dates	tree_add_dates
tree_add_nodelabels	tree_add_nodelabels
tree_add_outgroup	tree_add_outgroup
tree_check	tree_check
tree_fix_brlen	tree_fix_brlen
tree_from_taxonomy	tree_from_taxonomy
tree_get_node_data	tree_get_node_data
tree_get_singleton_outgroup	tree_get_singleton_outgroup
tree_node_tips	tree_node_tips
update_all_cached	update_all_cached
update_datelife_cache	update_datelife_cache
use_all_calibrations	use_all_calibrations
use_calibrations	use_calibrations
use_calibrations_bladj	use_calibrations_bladj
use_calibrations_bladj.matchedCalibrations	use_calibrations_bladj.matchedCalibrations
use_calibrations_each	use_calibrations_each
use_calibrations_pathd8	use_calibrations_pathd8
use_calibrations_treePL	use_calibrations_treePL
