| assemble | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). | 
| barplot-method | Class '"plasma"' | 
| combineAllWeights | Class '"CombinedWeights"' | 
| CombinedWeights | Class '"CombinedWeights"' | 
| CombinedWeights-class | Class '"CombinedWeights"' | 
| Contribution | Class '"Contribution"' | 
| Contribution-class | Class '"Contribution"' | 
| fitCoxModels | Class '"MultiplePLSCoxModels"' | 
| fitSingleModel | Class '"SingleModel"' | 
| getAllWeights | Class '"Contribution"' | 
| getCompositeWeights | Class '"Contribution"' | 
| getFinalWeights | Class '"Contribution"' | 
| getSizes | Class '"MultiplePLSCoxModels"' | 
| getTop | Class '"Contribution"' | 
| heat | Class '"Contribution"' | 
| heat-method | Class '"Contribution"' | 
| image-method | Class '"Contribution"' | 
| image-method | Class '"CombinedWeights"' | 
| interpret | Class '"CombinedWeights"' | 
| loadESCAdata | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). | 
| loadLUSCdata | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). | 
| m450info | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). | 
| meanModeImputer | Imputation | 
| mirESCA | ESCA type data | 
| MultiOmics | Class '"MultiOmics"' | 
| MultiOmics-class | Class '"MultiOmics"' | 
| MultiplePLSCoxModels | Class '"MultiplePLSCoxModels"' | 
| MultiplePLSCoxModels-class | Class '"MultiplePLSCoxModels"' | 
| Outcome | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). | 
| pickSignificant | Class '"Contribution"' | 
| plasma | Class '"plasma"' | 
| plasma-class | Class '"plasma"' | 
| plasmaEnv | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). | 
| plasmaPredictions | Class '"plasmaPredictions"' | 
| plasmaPredictions-class | Class '"plasmaPredictions"' | 
| plot-method | Class '"MultiOmics"' | 
| plot-method | Class '"SingleModel"' | 
| plot-method | Class '"MultiplePLSCoxModels"' | 
| plot-method | Class '"plasma"' | 
| plot-method | Class '"plasmaPredictions"' | 
| predict-method | Class '"SingleModel"' | 
| predict-method | Class '"MultiplePLSCoxModels"' | 
| predict-method | Class '"plasma"' | 
| prepareMultiOmics | Class '"MultiOmics"' | 
| samplingImputer | Imputation | 
| SingleModel-class | Class '"SingleModel"' | 
| stdize | Class '"CombinedWeights"' | 
| summary-method | Class '"MultiOmics"' | 
| summary-method | Class '"SingleModel"' | 
| summary-method | Class '"MultiplePLSCoxModels"' | 
| summary-method | Class '"plasma"' | 
| summary-method | Class '"Contribution"' | 
| summary-method | Class '"CombinedWeights"' | 
| TCGA-ESCA | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). | 
| TCGA-LUSC | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). | 
| tfESCA | ESCA type data | 
| validMultiOmics | Class '"MultiOmics"' | 
| validMultipleCoxModels | Class '"MultiplePLSCoxModels"' | 
| [-method | Class '"MultiOmics"' | 
| [-method | Class '"MultiplePLSCoxModels"' | 
| [-method | Class '"Contribution"' |