ACE_FPK                 Ancestral Character Estimation
BBMV-package            Models for Continuous Traits Evolving in
                        Macroevolutionary Landscapes of any Shape
ConvProp_bounds         Convolution of the diffusion matrix with the
                        trait density vector.
DiffMat_backwards       Diffusion matrix building
DiffMat_forward         Diffusion matrix building
FPK_sim_traitgram       Simulations with traitgram
FormatTree_bounds       Tree formatting.
LogLik_bounds           Likelihood of the FPK model
MH_MCMC_FPK             MCMC estimation
MH_MCMC_FPK_multiclades
                        MCMC estimation on multiple clades
Sim_FPK                 Simulation of the BBM+V process.
Uncertainty_FPK         Parameter uncertainty
VectorPos_bounds        Discretization of a continuous trait value into
                        a probability vector.
charac_time             Characteristic time measurement
find.mle_FPK            Maximum-likelihood estimation
find.mle_FPK_multiple_clades_same_V_different_sig2
                        Maximum-likelihood estimation
fit_FPK_multiple_clades_different_V_different_sig2
                        Fit independent models in several clades.
get.landscape.FPK       Plot macroevolutionary landscapes estimated by
                        the FPK or BBM+V models
get.landscape.FPK.MCMC
                        Plot posterior distribution of
                        macroevolutionary landscapes.
lnL_FPK                 Creation of the likelihood function
lnl_FPK_multiclades_same_V_different_sig2
                        Likelihood functions for multiple clades
log_prior_5pars_root_bounds
                        Prior function.
log_prior_nclades_plus_3_pars
                        Prior function.
posterior_vs_prior      Posterior vs. prior comparison for the FPK
                        model.
prep_mat_exp            Matrix exponential.
proposal_5pars_root_bounds
                        Parameter update for the MCMC function
proposal_nclades_plus_3_pars
                        Parameter update for the multiclade MCMC
                        function
reformat_multiclade_results
                        Format the output of a multiclade fit
trans_from_fixed        Linear transformations
