# Generated by roxygen2: do not edit by hand

S3method(as.sparse,DelayedMatrix)
export(SAMPLE_DATABASE_URL)
export(create_interface_app)
export(get_SingleCellExperiment)
export(get_atlas_versions)
export(get_cell_communication_strength)
export(get_counts_per_million)
export(get_default_cache_dir)
export(get_metadata)
export(get_metadata_url)
export(get_pseudobulk)
export(get_seurat)
export(get_single_cell_experiment)
export(join_census_table)
export(keep_quality_cells)
export(organize_inputs)
importFrom(BiocGenerics,cbind)
importFrom(DBI,dbConnect)
importFrom(DBI,dbExecute)
importFrom(S4Vectors,DataFrame)
importFrom(Seurat,as.SingleCellExperiment)
importFrom(SeuratObject,as.Seurat)
importFrom(SeuratObject,as.sparse)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"assayNames<-")
importFrom(SummarizedExperiment,"assays<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(anndataR,write_h5ad)
importFrom(checkmate,assert)
importFrom(checkmate,check_subset)
importFrom(checkmate,check_true)
importFrom(cli,cli_abort)
importFrom(cli,cli_alert_info)
importFrom(cli,cli_alert_success)
importFrom(cli,cli_alert_warning)
importFrom(cli,cli_progress_bar)
importFrom(cli,cli_progress_done)
importFrom(cli,cli_progress_update)
importFrom(cli,hash_sha256)
importFrom(curl,curl_fetch_memory)
importFrom(curl,multi_download)
importFrom(curl,multi_run)
importFrom(curl,new_pool)
importFrom(curl,parse_headers_list)
importFrom(dbplyr,remote_con)
importFrom(dbplyr,sql)
importFrom(dplyr,all_of)
importFrom(dplyr,any_of)
importFrom(dplyr,as_tibble)
importFrom(dplyr,collect)
importFrom(dplyr,contains)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,group_split)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,matches)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,tbl)
importFrom(dplyr,transmute)
importFrom(duckdb,duckdb)
importFrom(glue,glue)
importFrom(glue,glue_sql)
importFrom(httr,GET)
importFrom(httr,modify_url)
importFrom(httr,parse_url)
importFrom(httr,progress)
importFrom(httr,stop_for_status)
importFrom(httr,write_disk)
importFrom(methods,as)
importFrom(methods,is)
importFrom(purrr,imap)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map_chr)
importFrom(purrr,map_dbl)
importFrom(purrr,map_lgl)
importFrom(purrr,pmap)
importFrom(purrr,reduce)
importFrom(purrr,set_names)
importFrom(purrr,walk)
importFrom(rclipboard,rclipButton)
importFrom(rclipboard,rclipboardSetup)
importFrom(rlang,.data)
importFrom(rlang,set_names)
importFrom(shiny,a)
importFrom(shiny,actionButton)
importFrom(shiny,column)
importFrom(shiny,conditionalPanel)
importFrom(shiny,fluidPage)
importFrom(shiny,fluidRow)
importFrom(shiny,h3)
importFrom(shiny,h4)
importFrom(shiny,hr)
importFrom(shiny,icon)
importFrom(shiny,isolate)
importFrom(shiny,mainPanel)
importFrom(shiny,observeEvent)
importFrom(shiny,p)
importFrom(shiny,reactive)
importFrom(shiny,reactiveValues)
importFrom(shiny,renderText)
importFrom(shiny,renderUI)
importFrom(shiny,selectInput)
importFrom(shiny,shinyApp)
importFrom(shiny,sidebarLayout)
importFrom(shiny,sidebarPanel)
importFrom(shiny,tabPanel)
importFrom(shiny,tabsetPanel)
importFrom(shiny,tagList)
importFrom(shiny,tags)
importFrom(shiny,textAreaInput)
importFrom(shiny,titlePanel)
importFrom(shiny,uiOutput)
importFrom(shiny,updateSelectInput)
importFrom(shiny,verbatimTextOutput)
importFrom(shinyWidgets,pickerInput)
importFrom(shinyWidgets,pickerOptions)
importFrom(tibble,column_to_rownames)
importFrom(tools,R_user_dir)
importFrom(utils,head)
importFrom(utils,packageName)
importFrom(zellkonverter,readH5AD)
