Package: BenchHub
Title: Comprehensive Collection of Curated Benchmarking Datasets and
        their Evaluation
Version: 0.99.14
Authors@R: c(
    person("Cabiria", "Liang", , "xiaoqi.liang@sydney.edu.au", role = "aut"),
    person("Sanghyun", "Kim", , "sanghyun.kim@sydney.edu.au", role = "aut"),
    person("Nick", "Robertson", , "nicholas.robertson@sydney.edu.au", role = c("aut")),
    person("Marni", "Torkel", , "marni.torkel@sydney.edu.au", role = "aut"),
    person("Yue", "Cao", , "yue.cao@sydney.edu.au", role = "aut", comment = c(ORCID = "0000-0002-2356-4031")),
    person("Dario", "Strbenac", , "dario.strbenac@sydney.edu.au", role = "aut"),
    person("Jean", "Yang", , "jean.yang@sydney.edu.au", role = "aut"),
    person("SOMS", "Maintainer", , "maths.bioconductor@sydney.edu.au", role = c("aut", "cre"))
  )
Description: The trio is the combination of a data set, a metric and supporting evidence which provides some best case scenario, if not the ground truth itself. BenchHub has data downloaders for FigShare, G.E.O., and ExperimentHub. Caching is used to avoid lengthy downloads after the first time a data set is accessed. The user may also specify their own data set and supporting evidence. The Benchmark Insights module provides functionality for comparing and contrasting the performance of alternative algorithms.
biocViews: Infrastructure, DataImport, DataRepresentation, Software,
        WorkflowStep, Visualization
License: MIT + file LICENSE
Encoding: UTF-8
Language: en-GB
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.5.0)
Imports: cli, fs, glue, R6, rlang, httr2, stringr, purrr, dplyr,
        reshape2, utils, curl, googlesheets4, survAUC, Hmisc, ggrepel,
        ggsci, ggcorrplot, broom, dotwhisker, splitTools, magrittr,
        withr, ggplot2, data.table, jsonlite
Suggests: anndata, readr, GEOquery, ExperimentHub, zen4R, knitr, ks,
        rmarkdown, SingleCellExperiment, SummarizedExperiment,
        survival, cvTools, funkyheatmap, testthat (>= 3.0.0),
        clusterProfiler, DOSE, DO.db, EnsDb.Hsapiens.v86, BiocStyle,
        tidyverse, glmnet, scran, scuttle, edgeR
VignetteBuilder: knitr
Config/testthat/edition: 3
BugReports: https://github.com/SydneyBioX/BenchHub/issues
URL: https://sydneybiox.github.io/BenchHub/
NeedsCompilation: no
Packaged: 2026-04-22 05:47:19 UTC; pkgbuild
Author: Cabiria Liang [aut],
  Sanghyun Kim [aut],
  Nick Robertson [aut],
  Marni Torkel [aut],
  Yue Cao [aut] (ORCID: <https://orcid.org/0000-0002-2356-4031>),
  Dario Strbenac [aut],
  Jean Yang [aut],
  SOMS Maintainer [aut, cre]
Maintainer: SOMS Maintainer <maths.bioconductor@sydney.edu.au>
