Changes in version 1.48.1 o Formally deprecate ChIPQCreport() per Bioconductor deprecation guidelines: the function now emits a .Deprecated() warning and returns invisibly. The Nozzle.R1 CRAN package it depended on is no longer available, so HTML report generation is no longer possible. Per Bioconductor policy the function will be made defunct in the next release cycle. The original source is preserved in inst/legacy/report.r for reference. See ?'ChIPQC-deprecated' for replacements (QC accessor methods; deeptools for visual reports). o Remove Nozzle.R1 from Imports: (no longer reachable from any executed code path). o Add zzz.R to the Collate: field (R 4.6 strict Collate enforcement). o Reduce R CMD check NOTE noise: import is from methods, geom_point from ggplot2, and multicoreWorkers/snowWorkers from BiocParallel; register the data-frame column names used in ggplot2::aes() calls (Sample, FRIP, FRIBL, etc.) via utils::globalVariables(). No behaviour change. o Fix \itemize \to \describe in man/ChIPQC.Rd and man/ChIPQCsample-class.Rd: items used \item{label}{description} (a \describe semantic) inside an \itemize wrapper, producing roughly 40 ``Lost braces'' NOTEs. The rendered output also improves (proper definition list rather than malformed bullets). Changes in version 1.35.1 o rollup bugfixes Changes in version 1.33.1 o Make use of BiocParallel more robust - now a Depends o Bugfix for(is.na(peaks)) issue Changes in version 1.31.2 o bugfixes o handle larger plots Changes in version 1.25.1 o Update to maintain compatibility with DiffBind 3.0 Changes in version 1.13.2 o Fix build issue o Fixed bug when specifying consensus peakset as GRanges Changes in version 1.9.2 o Dependancy cleanup; update handling of how control samples are added Changes in version 1.7.2 o Convert data objects for DiffBind compatibility Changes in version 1.7.1 o Maintain compatibility with changes in DiffBind Changes in version 1.1.2 o Big fixes/man page fixes Changes in version 1.0.1 o Changed defaults: annotation, facetBy o Bugfixes handling sample lists without peaks Changes in version 1.0.0 o Initial release.