TreeAndLeaf
This is the released version of TreeAndLeaf; for the devel version, see TreeAndLeaf.
Displaying binary trees with focus on dendrogram leaves
Bioconductor version: Release (3.22)
TreeAndLeaf implements a hybrid layout strategy that enhances leaf-level visualization in dendrograms. By integrating force-directed graph and tree layout algorithms, it enables projection of multiple layers of information onto graph–tree diagrams.
Author: Milena Cardoso [aut], Luis Rizzardi [aut], Leonardo Kume [aut], Sheyla Trefflich [ctb], Clarice Groeneveld [ctb], Mauro Castro [aut, cre]
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
citation("TreeAndLeaf")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TreeAndLeaf")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TreeAndLeaf")| TreeAndLeaf: an graph layout to dendrograms. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, GraphAndNetwork, Network, Software, SystemsBiology, Visualization |
| Version | 1.22.2 |
| In Bioconductor since | BioC 3.11 (R-4.0) (6 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.4) |
| Imports | RedeR(>= 3.6.1), igraph, ape |
| System Requirements | |
| URL | https://doi.org/10.1093/bioinformatics/btab819 |
| Bug Reports | https://github.com/sysbiolab/TreeAndLeaf/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, ggtree, ggplot2, dplyr, dendextend, RColorBrewer |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RedeR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TreeAndLeaf_1.22.2.tar.gz |
| Windows Binary (x86_64) | TreeAndLeaf_1.22.0.zip |
| macOS Binary (x86_64) | TreeAndLeaf_1.22.0.tgz |
| macOS Binary (arm64) | TreeAndLeaf_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TreeAndLeaf |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TreeAndLeaf |
| Bioc Package Browser | https://code.bioconductor.org/browse/TreeAndLeaf/ |
| Package Short Url | https://bioconductor.org/packages/TreeAndLeaf/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.22 | Source Archive |