Moma-class              MOMA Object
MomaConstructor         MOMA Constructor Function
cnvScoreStouffer        Integrate CNV scores
example.gbm.mae         Glioblastoma (GBM) Example Dataset
gbm.pathways            Glioblastoma (GBM) Pathways
gene.map                Gene Location Mapping
makeSaturationPlots     Main function to generate the summary plots of
                        the analysis
mapEntrez               Convert from entrez ids to hugo gene names
mapHugo                 Convert from hugo gene names to entrez ids
mapScoresCnvBand        Map scores to cytoband location
mutSig                  MutSig Blacklisted genes
sampleNameFilter        Retain TCGA sample ids without the final letter
                        designation ('A/B/C')
stoufferIntegrate       dispatch method for either CNV location
                        corrected or SNV
stoufferIntegrateDiggit
                        Use Stouffer's method to combine z-scores of
                        DIGGIT interactions for each cMR protein.
