# Multi Omic Master Regulator Analysis

## Documentation for package ‘MOMA’ version 1.23.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

cnvScoreStouffer | Integrate CNV scores
example.gbm.mae | Glioblastoma (GBM) Example Dataset
gbm.pathways | Glioblastoma (GBM) Pathways
gene.map | Gene Location Mapping
makeSaturationPlots | Main function to generate the summary plots of the analysis
mapEntrez | Convert from entrez ids to hugo gene names
mapHugo | Convert from hugo gene names to entrez ids
mapScoresCnvBand | Map scores to cytoband location
Moma | MOMA Object
Moma-class | MOMA Object
MomaConstructor | MOMA Constructor Function
mutSig | MutSig Blacklisted genes
sampleNameFilter | Retain TCGA sample ids without the final letter designation ('A/B/C')
stoufferIntegrate | dispatch method for either CNV location corrected or SNV
stoufferIntegrateDiggit | Use Stouffer's method to combine z-scores of DIGGIT interactions for each cMR protein.