iModMix 1.0.0 ============= **Initial Release** - Introduction of `iModMix`, a novel network-based approach that integrates multi-omics data, including metabolomics, proteomics, and transcriptomics data. - Ability to incorporate both identified and unidentified metabolites. - Functions for loading and preprocessing data, performing partial correlation analysis, hierarchical clustering, and module eigengene calculation. - Integration of multiple omics datasets to reveal significant associations with phenotypes of interest. - Visualization tools for dendrograms, module assignments, and network plots. - Enrichment analysis using gene symbols with support for various databases. Key Features ------------ - `load_data()`: Function to load and preprocess expression data. - `partial_cors()`: Function to perform partial correlation analysis using Graphical Lasso. - `hierarchical_cluster()`: Function to perform hierarchical clustering using TOM or partial correlation matrix. - `cluster_assignments()`: Function to assign clusters to features based on hierarchical clustering. - `Eigengenes()`: Function to calculate module eigengenes. - `perform_classification()`: Function to relate modules to phenotypes using statistical analysis. - `Modules_correlation()`: Function to integrate multiple omics datasets and calculate correlations. - `Assigment_genes_enrichr()`: Function to perform enrichment analysis using gene symbols. - Created documentation and examples for the functions. - Added vignette to demonstrate the usage of the package.