spARI

This is the development version of spARI; to use it, please install the devel version of Bioconductor.

Spatially Aware Adjusted Rand Index for Evaluating Spatial Transcritpomics Clustering

Bioconductor version: Development (3.22)

The R package used in the manuscript "Spatially Aware Adjusted Rand Index for Evaluating Spatial Transcritpomics Clustering".

Author: Yinqiao Yan [aut, cre], Xiangnan Feng [aut, fnd], Xiangyu Luo [aut, fnd]

Maintainer: Yinqiao Yan <yinqiaoyan at bjut.edu.cn>

Citation (from within R, enter citation("spARI")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("spARI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, DataImport, GeneExpression, Software, Spatial, Transcriptomics
Version	0.99.12
In Bioconductor since	BioC 3.22 (R-4.5)
License	GPL (>= 2)
Depends	R (>= 4.1.0)
Imports	Rcpp, stats, Matrix, SpatialExperiment, SummarizedExperiment, BiocParallel(>= 1.0)
System Requirements
URL

Suggests	knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
Linking To	Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)	spARI_0.99.12.tgz
macOS Binary (arm64)	spARI_0.99.12.tgz
Source Repository	git clone https://git.bioconductor.org/packages/spARI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/spARI
Bioc Package Browser	https://code.bioconductor.org/browse/spARI/
Package Short Url	https://bioconductor.org/packages/spARI/
Package Downloads Report	Download Stats