Package: msmsTests
Type: Package
Title: LC-MS/MS Differential Expression Tests
Version: 1.49.0
Date: 2013-10-02
Author: Josep Gregori, Alex Sanchez, and Josep Villanueva
Maintainer: Josep Gregori i Font <josep.gregori@gmail.com>
Depends: R (>= 3.0.1), MSnbase, msmsEDA
Imports: edgeR, qvalue
Suggests: xtable
Description: Statistical tests for label-free LC-MS/MS data by spectral
        counts, to discover differentially expressed proteins between
        two biological conditions. Three tests are available: Poisson
        GLM regression, quasi-likelihood GLM regression, and the
        negative binomial of the edgeR package.The three models admit
        blocking factors to control for nuissance variables.To assure a
        good level of reproducibility a post-test filter is available,
        where we may set the minimum effect size considered biologicaly
        relevant, and the minimum expression of the most abundant
        condition.
License: GPL-2
biocViews: ImmunoOncology, Software, MassSpectrometry, Proteomics
Config/pak/sysreqs: libglpk-dev make libicu-dev libxml2-dev
        libnetcdf-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:15:47 UTC
RemoteUrl: https://github.com/bioc/msmsTests
RemoteRef: HEAD
RemoteSha: dc9d411d41a88f7988a4953ce15c0dae62b0f11b
NeedsCompilation: no
Packaged: 2025-11-02 15:10:29 UTC; root
Built: R 4.6.0; ; 2025-11-02 15:14:56 UTC; windows
