Package: SGCP
Type: Package
Title: SGCP: A semi-supervised pipeline for gene clustering using
        self-training approach in gene co-expression networks
Version: 1.11.0
Authors@R: c(person("Niloofar", "AghaieAbiane", email = "niloofar.abiane@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-1096-7592")),
			 person("Ioannis", "Koutis", email = "ikoutis@njit.edu", role = c("aut")))
Description: SGC is a semi-supervised pipeline for gene clustering in
        gene co-expression networks. SGC consists of multiple novel
        steps that enable the computation of highly enriched modules in
        an unsupervised manner. But unlike all existing frameworks, it
        further incorporates a novel step that leverages Gene Ontology
        information in a semi-supervised clustering method that further
        improves the quality of the computed modules.
License: GPL-3
Encoding: UTF-8
Imports: ggplot2, expm, caret, plyr, dplyr, GO.db, annotate,
        SummarizedExperiment, genefilter, GOstats, RColorBrewer,
        xtable, Rgraphviz, reshape2, openxlsx, ggridges, DescTools,
        org.Hs.eg.db, methods, grDevices, stats, RSpectra, graph
Suggests: knitr, rmarkdown, BiocManager, devtools, BiocStyle
Depends: R (>= 4.2.0)
biocViews: GeneExpression, GeneSetEnrichment, NetworkEnrichment,
        SystemsBiology, Classification, Clustering, DimensionReduction,
        GraphAndNetwork, NeuralNetwork, Network, mRNAMicroarray,
        RNASeq, Visualization
VignetteBuilder: knitr
NeedsCompilation: no
URL: https://github.com/na396/SGCP
RoxygenNote: 7.2.1
LazyData: true
Config/pak/sysreqs: make libicu-dev libpng-dev libxml2-dev libssl-dev
        libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:20:24 UTC
RemoteUrl: https://github.com/bioc/SGCP
RemoteRef: HEAD
RemoteSha: d3ffc3a53fac0c517e9bc9da8237aa92fd273e96
Packaged: 2026-02-08 09:53:15 UTC; root
Author: Niloofar AghaieAbiane [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1096-7592>),
  Ioannis Koutis [aut]
Maintainer: Niloofar AghaieAbiane <niloofar.abiane@gmail.com>
Built: R 4.6.0; ; 2026-02-08 09:56:54 UTC; windows
