utils::sessionInfo()
## R version 4.6.0 RC (2026-04-17 r89917)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.4 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.24-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] EpiCompare_1.15.2 BiocStyle_2.39.0
##
## loaded via a namespace (and not attached):
## [1] BiocIO_1.21.0
## [2] bitops_1.0-9
## [3] ggplotify_0.1.3
## [4] filelock_1.0.3
## [5] tibble_3.3.1
## [6] polyclip_1.10-7
## [7] enrichit_0.1.4
## [8] XML_3.99-0.23
## [9] lifecycle_1.0.5
## [10] httr2_1.2.2
## [11] lattice_0.22-9
## [12] MASS_7.3-65
## [13] magrittr_2.0.5
## [14] plotly_4.12.0
## [15] sass_0.4.10
## [16] rmarkdown_2.31
## [17] jquerylib_0.1.4
## [18] yaml_2.3.12
## [19] plotrix_3.8-14
## [20] otel_0.2.0
## [21] ggtangle_0.1.1
## [22] DBI_1.3.0
## [23] RColorBrewer_1.1-3
## [24] lubridate_1.9.5
## [25] abind_1.4-8
## [26] GenomicRanges_1.63.2
## [27] purrr_1.2.2
## [28] BiocGenerics_0.57.1
## [29] RCurl_1.98-1.18
## [30] yulab.utils_0.2.4
## [31] tweenr_2.0.3
## [32] rappdirs_0.3.4
## [33] gdtools_0.5.0
## [34] IRanges_2.45.0
## [35] S4Vectors_0.49.2
## [36] enrichplot_1.31.5
## [37] ggrepel_0.9.8
## [38] tidytree_0.4.7
## [39] ChIPseeker_1.47.1
## [40] codetools_0.2-20
## [41] DelayedArray_0.37.1
## [42] DOSE_4.5.1
## [43] ggforce_0.5.0
## [44] tidyselect_1.2.1
## [45] aplot_0.2.9
## [46] UCSC.utils_1.7.1
## [47] farver_2.1.2
## [48] base64enc_0.1-6
## [49] matrixStats_1.5.0
## [50] stats4_4.6.0
## [51] BiocFileCache_3.1.0
## [52] Seqinfo_1.1.0
## [53] GenomicAlignments_1.47.0
## [54] jsonlite_2.0.0
## [55] systemfonts_1.3.2
## [56] tools_4.6.0
## [57] ggnewscale_0.5.2
## [58] treeio_1.35.0
## [59] TxDb.Hsapiens.UCSC.hg19.knownGene_3.22.1
## [60] Rcpp_1.1.1-1
## [61] glue_1.8.1
## [62] SparseArray_1.11.13
## [63] xfun_0.57
## [64] MatrixGenerics_1.23.0
## [65] GenomeInfoDb_1.47.2
## [66] dplyr_1.2.1
## [67] withr_3.0.2
## [68] BiocManager_1.30.27
## [69] fastmap_1.2.0
## [70] boot_1.3-32
## [71] caTools_1.18.3
## [72] digest_0.6.39
## [73] mime_0.13
## [74] timechange_0.4.0
## [75] R6_2.6.1
## [76] gridGraphics_0.5-1
## [77] seqPattern_1.43.0
## [78] GO.db_3.23.1
## [79] gtools_3.9.5
## [80] dichromat_2.0-0.1
## [81] RSQLite_2.4.6
## [82] cigarillo_1.1.0
## [83] tidyr_1.3.2
## [84] generics_0.1.4
## [85] fontLiberation_0.1.0
## [86] data.table_1.18.2.1
## [87] rtracklayer_1.71.3
## [88] bsplus_0.1.5
## [89] httr_1.4.8
## [90] htmlwidgets_1.6.4
## [91] S4Arrays_1.11.1
## [92] scatterpie_0.2.6
## [93] downloadthis_0.5.0
## [94] pkgconfig_2.0.3
## [95] gtable_0.3.6
## [96] blob_1.3.0
## [97] S7_0.2.1-1
## [98] impute_1.85.0
## [99] XVector_0.51.0
## [100] htmltools_0.5.9
## [101] fontBitstreamVera_0.1.1
## [102] bookdown_0.46
## [103] scales_1.4.0
## [104] Biobase_2.71.0
## [105] png_0.1-9
## [106] ggfun_0.2.0
## [107] knitr_1.51
## [108] tzdb_0.5.0
## [109] reshape2_1.4.5
## [110] rjson_0.2.23
## [111] nlme_3.1-169
## [112] curl_7.0.0
## [113] cachem_1.1.0
## [114] stringr_1.6.0
## [115] BiocVersion_3.23.1
## [116] KernSmooth_2.23-26
## [117] parallel_4.6.0
## [118] AnnotationDbi_1.73.1
## [119] restfulr_0.0.16
## [120] pillar_1.11.1
## [121] grid_4.6.0
## [122] vctrs_0.7.3
## [123] gplots_3.3.0
## [124] tidydr_0.0.6
## [125] dbplyr_2.5.2
## [126] cluster_2.1.8.2
## [127] evaluate_1.0.5
## [128] magick_2.9.1
## [129] tinytex_0.59
## [130] readr_2.2.0
## [131] GenomicFeatures_1.63.2
## [132] cli_3.6.6
## [133] compiler_4.6.0
## [134] Rsamtools_2.27.2
## [135] rlang_1.2.0
## [136] crayon_1.5.3
## [137] labeling_0.4.3
## [138] plyr_1.8.9
## [139] fs_2.1.0
## [140] ggiraph_0.9.6
## [141] stringi_1.8.7
## [142] genomation_1.43.0
## [143] viridisLite_0.4.3
## [144] gridBase_0.4-7
## [145] BiocParallel_1.45.0
## [146] Biostrings_2.79.5
## [147] lazyeval_0.2.3
## [148] GOSemSim_2.37.2
## [149] fontquiver_0.2.1
## [150] Matrix_1.7-5
## [151] BSgenome_1.79.1
## [152] hms_1.1.4
## [153] patchwork_1.3.2
## [154] bit64_4.6.0-1
## [155] ggplot2_4.0.2
## [156] KEGGREST_1.51.1
## [157] SummarizedExperiment_1.41.1
## [158] AnnotationHub_4.1.0
## [159] igraph_2.2.3
## [160] memoise_2.0.1
## [161] bslib_0.10.0
## [162] ggtree_4.1.2
## [163] bit_4.6.0
## [164] ape_5.8-1