Updated: Mar-27-2026

This vignette provides troubleshooting tips for common issues encountered when using the MotifPeeker package.

If you encounter an issue that is not covered, please open an issue on the GitHub repository.


Session Info

utils::sessionInfo()
## R Under development (unstable) (2026-03-05 r89546)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.4 LTS
## 
## Matrix products: default
## BLAS:   /home/biocbuild/bbs-3.23-bioc/R/lib/libRblas.so 
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0  LAPACK version 3.12.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_GB              LC_COLLATE=C              
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## time zone: America/New_York
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] MotifPeeker_1.3.2
## 
## loaded via a namespace (and not attached):
##   [1] DBI_1.3.0                         bitops_1.0-9                     
##   [3] gridExtra_2.3                     httr2_1.2.2                      
##   [5] rlang_1.1.7                       magrittr_2.0.4                   
##   [7] otel_0.2.0                        matrixStats_1.5.0                
##   [9] compiler_4.6.0                    RSQLite_2.4.6                    
##  [11] vctrs_0.7.1                       pkgconfig_2.0.3                  
##  [13] crayon_1.5.3                      fastmap_1.2.0                    
##  [15] dbplyr_2.5.2                      XVector_0.51.0                   
##  [17] memes_1.19.1                      ca_0.71.1                        
##  [19] Rsamtools_2.27.1                  rmarkdown_2.31                   
##  [21] tzdb_0.5.0                        UCSC.utils_1.7.1                 
##  [23] purrr_1.2.1                       bit_4.6.0                        
##  [25] BSgenome.Hsapiens.UCSC.hg38_1.4.5 xfun_0.57                        
##  [27] cachem_1.1.0                      cigarillo_1.1.0                  
##  [29] GenomeInfoDb_1.47.2               jsonlite_2.0.0                   
##  [31] blob_1.3.0                        DelayedArray_0.37.0              
##  [33] BiocParallel_1.45.0               parallel_4.6.0                   
##  [35] R6_2.6.1                          bslib_0.10.0                     
##  [37] RColorBrewer_1.1-3                rtracklayer_1.71.3               
##  [39] GenomicRanges_1.63.1              jquerylib_0.1.4                  
##  [41] Rcpp_1.1.1                        Seqinfo_1.1.0                    
##  [43] assertthat_0.2.1                  SummarizedExperiment_1.41.1      
##  [45] iterators_1.0.14                  knitr_1.51                       
##  [47] readr_2.2.0                       IRanges_2.45.0                   
##  [49] Matrix_1.7-5                      tidyselect_1.2.1                 
##  [51] dichromat_2.0-0.1                 abind_1.4-8                      
##  [53] yaml_2.3.12                       viridis_0.6.5                    
##  [55] TSP_1.2.7                         codetools_0.2-20                 
##  [57] curl_7.0.0                        lattice_0.22-9                   
##  [59] tibble_3.3.1                      Biobase_2.71.0                   
##  [61] S7_0.2.1                          evaluate_1.0.5                   
##  [63] heatmaply_1.6.0                   BiocFileCache_3.1.0              
##  [65] universalmotif_1.29.0             Biostrings_2.79.5                
##  [67] pillar_1.11.1                     filelock_1.0.3                   
##  [69] MatrixGenerics_1.23.0             DT_0.34.0                        
##  [71] foreach_1.5.2                     stats4_4.6.0                     
##  [73] plotly_4.12.0                     generics_0.1.4                   
##  [75] RCurl_1.98-1.18                   S4Vectors_0.49.0                 
##  [77] hms_1.1.4                         ggplot2_4.0.2                    
##  [79] scales_1.4.0                      glue_1.8.0                       
##  [81] lazyeval_0.2.2                    tools_4.6.0                      
##  [83] dendextend_1.19.1                 BiocIO_1.21.0                    
##  [85] data.table_1.18.2.1               BSgenome_1.79.1                  
##  [87] webshot_0.5.5                     GenomicAlignments_1.47.0         
##  [89] registry_0.5-1                    XML_3.99-0.23                    
##  [91] grid_4.6.0                        tidyr_1.3.2                      
##  [93] seriation_1.5.8                   restfulr_0.0.16                  
##  [95] cli_3.6.5                         rappdirs_0.3.4                   
##  [97] S4Arrays_1.11.1                   viridisLite_0.4.3                
##  [99] dplyr_1.2.0                       gtable_0.3.6                     
## [101] sass_0.4.10                       digest_0.6.39                    
## [103] BiocGenerics_0.57.0               SparseArray_1.11.11              
## [105] rjson_0.2.23                      htmlwidgets_1.6.4                
## [107] farver_2.1.2                      memoise_2.0.1                    
## [109] htmltools_0.5.9                   lifecycle_1.0.5                  
## [111] httr_1.4.8                        MASS_7.3-65                      
## [113] bit64_4.6.0-1